RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeastyeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSM4YIL030C YFL065CP43539 102 aa2.65□□□□□ -1.99
SSM4YIL030C YNL184CP53876 108 aa2.65□□□□□ -1.99
SSM4YIL030C YPR203WQ08994 102 aa2.65□□□□□ -1.99
SSM4YIL030C YOR020W-AQ3E824 90 aa2.65□□□□□ -1.99
SSM4YIL030C RPL16AP26784 199 aaKnown RBP2.64□□□□□ -1.99
SSM4YIL030C UGX2P32772 223 aa2.64□□□□□ -1.99
SSM4YIL030C KTI12P34253 313 aaKnown RBP2.64□□□□□ -1.99
SSM4YIL030C RGM1Q00453 211 aa2.64□□□□□ -1.99
SSM4YIL030C YLR412C-AQ3E742 68 aa2.64□□□□□ -1.99
SSM4YIL030C SEC72P39742 193 aaKnown RBP2.64□□□□□ -1.99
SSM4YIL030C DUO1P53168 247 aaKnown RBP2.64□□□□□ -1.99
SSM4YIL030C YPL257WQ08974 193 aa2.64□□□□□ -1.99
SSM4YIL030C YLR307C-AQ3E825 87 aa2.64□□□□□ -1.99
SSM4YIL030C YAL065CO13511 128 aa2.64□□□□□ -1.99
SSM4YIL030C NRG2P38082 220 aa2.64□□□□□ -1.99
SSM4YIL030C URM1P40554 99 aaPredicted RBP2.64□□□□□ -1.99
SSM4YIL030C DAD1Q12248 94 aa2.64□□□□□ -1.99
SSM4YIL030C ENV10Q99382 181 aa2.64□□□□□ -1.99
SSM4YIL030C BEM2P39960 2167 aaKnown RBP2.64□□□□□ -1.99
SSM4YIL030C YBR056W-AI2HB52 66 aa2.63□□□□□ -1.99
SSM4YIL030C COX14P39103 70 aa2.63□□□□□ -1.99
SSM4YIL030C YIA6P40556 373 aa2.63□□□□□ -1.99
SSM4YIL030C FCY1Q12178 158 aa2.63□□□□□ -1.99
SSM4YIL030C SMP1P38128 452 aa2.63□□□□□ -1.99
SSM4YIL030C RRT13P40042 185 aa2.63□□□□□ -1.99
SSM4YIL030C PHO85P17157 305 aa2.63□□□□□ -1.99
SSM4YIL030C NHP2P32495 156 aaPredicted RBP2.63□□□□□ -1.99
SSM4YIL030C CAX4P53223 239 aa2.63□□□□□ -1.99
SSM4YIL030C SCS22Q6Q595 175 aa2.63□□□□□ -1.99
SSM4YIL030C RPL39P04650 51 aa2.62□□□□□ -1.99
SSM4YIL030C RPB10P22139 70 aa2.62□□□□□ -1.99
SSM4YIL030C ARC15P40518 154 aaRIP-Chip data2.62□□□□□ -1.99not detected
SSM4YIL030C RPR2P40571 144 aa2.62□□□□□ -1.99
SSM4YIL030C DCV1P43595 202 aa2.62□□□□□ -1.99
SSM4YIL030C NCE103P53615 221 aa2.62□□□□□ -1.99
SSM4YIL030C ABF2Q02486 183 aa2.62□□□□□ -1.99
SSM4YIL030C YPL278CQ08990 100 aa2.62□□□□□ -1.99
SSM4YIL030C YOR008C-AQ3E7B9 74 aa2.62□□□□□ -1.99
SSM4YIL030C HHF1P02309 103 aaKnown RBP2.62□□□□□ -1.99
SSM4YIL030C FIP1P45976 327 aa2.62□□□□□ -1.99
SSM4YIL030C RPL32P38061 130 aaKnown RBP2.62□□□□□ -1.99
SSM4YIL030C YMR244WQ04018 355 aa2.62□□□□□ -1.99
SSM4YIL030C YDR114CQ04597 100 aa2.62□□□□□ -1.99
SSM4YIL030C TOA2P32774 122 aa2.61□□□□□ -1.99
SSM4YIL030C GLO1P50107 326 aa2.61□□□□□ -1.99
SSM4YIL030C MRPS8Q03799 155 aa2.61□□□□□ -1.99
SSM4YIL030C YOS1Q3E834 85 aa2.61□□□□□ -1.99
SSM4YIL030C BLM10P43583 2143 aa2.61□□□□□ -1.99
SSM4YIL030C ATX1P38636 73 aa2.61□□□□□ -1.99
SSM4YIL030C YFR057WP43625 151 aa2.61□□□□□ -1.99
SSM4YIL030C HPA2Q06592 156 aa2.61□□□□□ -1.99
SSM4YIL030C PPT2Q12036 173 aa2.61□□□□□ -1.99
SSM4YIL030C MET32Q12041 191 aa2.61□□□□□ -1.99
SSM4YIL030C ACC1Q00955 2233 aaKnown RBP2.61□□□□□ -1.99
SSM4YIL030C HMRA2P0CY13 119 aa2.61□□□□□ -1.99
SSM4YIL030C YGR025WP53216 100 aa2.61□□□□□ -1.99
SSM4YIL030C IRC25Q07951 179 aa2.61□□□□□ -1.99
SSM4YIL030C YPL261CQ08976 102 aa2.61□□□□□ -1.99
SSM4YIL030C YHL042WP38729 150 aa2.6□□□□□ -1.99
SSM4YIL030C MPC2P38857 129 aa2.6□□□□□ -1.99
SSM4YIL030C YPS5P53057 165 aa2.6□□□□□ -1.99
SSM4YIL030C YDR182W-AQ3E796 67 aa2.6□□□□□ -1.99
SSM4YIL030C VMA11P32842 164 aa2.6□□□□□ -1.99
SSM4YIL030C YBR219CP38317 127 aa2.6□□□□□ -1.99
SSM4YIL030C VPS55P47111 140 aa2.6□□□□□ -1.99
SSM4YIL030C SRL1Q08673 210 aa2.6□□□□□ -1.99
SSM4YIL030C SPC29P33419 253 aa2.59□□□□□ -1.99
SSM4YIL030C KNH1P50112 268 aa2.59□□□□□ -1.99
SSM4YIL030C YLR361C-AQ3E795 98 aa2.59□□□□□ -1.99
SSM4YIL030C HUA1P40325 198 aa2.59□□□□□ -1.99
SSM4YIL030C WIP1Q2V2P8 89 aa2.59□□□□□ -1.99
SSM4YIL030C YIR020CP40575 100 aa2.59□□□□□ -2
SSM4YIL030C YFR035CP43608 114 aa2.59□□□□□ -2
SSM4YIL030C MSL5Q12186 476 aaKnown RBP RIP-Chip data2.59□□□□□ -2not detected
SSM4YIL030C TEL1P38110 2787 aa2.59□□□□□ -2
SSM4YIL030C SEC16P48415 2195 aaKnown RBP2.59□□□□□ -2
SSM4YIL030C ECM12O13529 151 aa2.59□□□□□ -2
SSM4YIL030C RPL16BP26785 198 aaKnown RBP2.59□□□□□ -2
SSM4YIL030C MRPL38P35996 138 aaPredicted RBP2.59□□□□□ -2
SSM4YIL030C YPL229WQ99395 206 aa2.59□□□□□ -2
SSM4YIL030C YEL008WP40001 126 aa2.58□□□□□ -2
SSM4YIL030C SIM1P40472 476 aa2.58□□□□□ -2
SSM4YIL030C YOL166W-AQ8TGJ1 51 aa2.58□□□□□ -2
SSM4YIL030C YHR139C-AO13536 103 aa2.58□□□□□ -2
SSM4YIL030C YER039C-AP0CD97 72 aa2.58□□□□□ -2
SSM4YIL030C YGR045CP53229 120 aa2.58□□□□□ -2
SSM4YIL030C YHR130CP38834 111 aa2.57□□□□□ -2
SSM4YIL030C RPL15AP05748 204 aaKnown RBP2.57□□□□□ -2
SSM4YIL030C UBC4P15731 148 aa2.57□□□□□ -2
SSM4YIL030C RPL15BP54780 204 aaPredicted RBP2.57□□□□□ -2
SSM4YIL030C ICY1Q04329 127 aa2.57□□□□□ -2
SSM4YIL030C KRE9P39005 276 aa2.57□□□□□ -2
SSM4YIL030C TAR1Q8TGM6 124 aa2.57□□□□□ -2
SSM4YIL030C RPS11AP0CX47 156 aaKnown RBP2.56□□□□□ -2
SSM4YIL030C RPS11BP0CX48 156 aaKnown RBP2.56□□□□□ -2
SSM4YIL030C SAP30P38429 201 aa2.56□□□□□ -2
SSM4YIL030C RSM19P53733 91 aaPredicted RBP2.56□□□□□ -2
SSM4YIL030C YMR320WQ04897 101 aa2.56□□□□□ -2
SSM4YIL030C TDA8Q6B2U8 126 aa2.56□□□□□ -2
SSM4YIL030C PRM7Q12459 698 aa2.56□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 122.7 ms