RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HNRNPABQ99729 332 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 KXD1Q9BQD3 176 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TTLL2Q9BWV7 592 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 NT5C1AQ9BXI3 368 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 NAA15Q9BXJ9 866 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 VPS16Q9H269 839 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 GANQ9H2C0 597 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 CSNK1G1Q9HCP0 422 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 KRT82Q9NSB4 513 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 OSER1Q9NX31 292 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 IL37Q9NZH6 218 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 LIMA1Q9UHB6 759 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 DPP7Q9UHL4 492 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 MAGED2Q9UNF1 606 aaPredicted RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 CCL26Q9Y258 94 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 SIK3Q9Y2K2 1263 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 R3HCC1Q9Y3T6 440 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 FHOD1Q9Y613 1164 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 HELZP42694 1942 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 MYOFQ9NZM1 2061 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 MYO15AQ9UKN7 3530 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 DMDP11532 3685 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 GTPBP10A4D1E9 387 aaKnown RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 C2orf78A6NCI8 922 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 FAM86C2PA6NEL3 165 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 LRRC10BA6NIK2 292 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 PI4K2BG5E9Z4 385 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 O00370 1275 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 AP1G2O75843 785 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 PDGFBP01127 241 aaPredicted RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 BRD2P25440 801 aaKnown RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 GRIK1P39086 918 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 EPHB3P54753 998 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 MAP3K7CLP57077 242 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 MYL5Q02045 173 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 WDR44Q5JSH3 913 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 ARHGAP17Q68EM7 881 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 VSTM1Q6UX27 236 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 C4orf50Q6ZRC1 276 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 PDZD4Q76G19 769 aaPredicted RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 LUZP1Q86V48 1076 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 PPM1KQ8N3J5 372 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 SLC44A3Q8N4M1 653 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 ASIC4Q96FT7 647 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 FAXDC2Q96IV6 333 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 SPATA17Q96L03 361 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 HEXIM2Q96MH2 286 aaKnown RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 ASB16Q96NS5 453 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 NAP1L5Q96NT1 182 aaPredicted RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 NT5C1BQ96P26 610 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 CYP2S1Q96SQ9 504 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 BPIFA3Q9BQP9 254 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 NMUR1Q9HB89 426 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 UBE2TQ9NPD8 197 aaPredicted RBP9.78□□□□□ -0.84
VPS35-206ENST00000565228 ASAH2Q9NR71 780 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 TJP2Q9UDY2 1190 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 DACH1Q9UI36 760 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 CYTH4Q9UIA0 394 aa9.78□□□□□ -0.84
VPS35-206ENST00000565228 F5P12259 2224 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FAM170AA1A519 330 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FAM92AA1XBS5 289 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FOXN3O00409 490 aaPredicted RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 MICAL2O94851 1124 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 CLSTN1O94985 981 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FGFR1OPO95684 399 aaKnown RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 ZDHHC11BP0C7U3 371 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 PRKCSHP14314 528 aaPredicted RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 EEF1GP26641 437 aaKnown RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 CLCN1P35523 988 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 ZNF165P49910 485 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 SLC5A3P53794 718 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 ZXDAP98168 799 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 GCNT1Q02742 428 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TAF10Q12962 218 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 GRM2Q14416 872 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TPD52L1Q16890 204 aaPredicted RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 EXOC3L4Q17RC7 722 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 GOLGA7BQ2TAP0 167 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 KLHDC7AQ5VTJ3 777 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 DENND1BQ6P3S1 775 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TMEM270Q6UE05 265 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 VITQ6UXI7 678 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 GBP6Q6ZN66 633 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 DENND5BQ6ZUT9 1274 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 OTOP3Q7RTS5 596 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 SCD5Q86SK9 330 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 WDTC1Q8N5D0 677 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 RBBP8NLQ8NC74 664 aaPredicted RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 UBA3Q8TBC4 463 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FAM200AQ8TCP9 573 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 SHC3Q92529 594 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 JAKMIP2Q96AA8 810 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 CHFRQ96EP1 664 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 P2RY11Q96G91 374 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TRMT2BQ96GJ1 504 aaKnown RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 TNIP3Q96KP6 325 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 MED10Q9BTT4 135 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 LSM14BQ9BX40 385 aaKnown RBP9.77□□□□□ -0.85
VPS35-206ENST00000565228 IMPG2Q9BZV3 1241 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 RNF38Q9H0F5 515 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms