RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	GAB4	Q2WGN9	574 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PREPL	Q4J6C6	727 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	TMEM119	Q4V9L6	283 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADAL	Q6DHV7	355 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	ARMCX6	Q7L4S7	300 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	TRMT11	Q7Z4G4	463 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PDCL2	Q8N4E4	241 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	LRRC52	Q8N7C0	313 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	FAM184A	Q8NB25	1140 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	TXNDC5	Q8NBS9	432 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	KCNV2	Q8TDN2	545 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PNMA5	Q96PV4	448 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CYP2S1	Q96SQ9	504 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PNKP	Q96T60	521 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	PKMYT1	Q99640	499 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	GTPBP2	Q9BX10	602 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	MBD1	Q9UIS9	605 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	STYXL1	Q9Y6J8	313 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	SCN1A	P35498	2009 aa		13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	FASN	P49327	2511 aa	Known RBP	13.33	□□□□□ -0.28
CAPN1-223	ENST00000533079	SDK1	Q7Z5N4	2213 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	GCN1	Q92616	2671 aa	Known RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079		A0A0A0MRY4	1105 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	TCRBV21S2A2	A0A5A6	115 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	C2orf78	A6NCI8	922 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	SGK1	O00141	431 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	FAM13A	O94988	1023 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	KAT7	O95251	611 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	KLF8	O95600	359 aa	Predicted RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADH1C	P00326	375 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ITPKA	P23677	461 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	TNFRSF4	P43489	277 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	PPP3CC	P48454	512 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ATP2C1	P98194	919 aa	Predicted RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	RPL6	Q02878	288 aa	Known RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	REST	Q13127	1097 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ARSH	Q5FYA8	562 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	SDHAF4	Q5VUM1	108 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	C4orf50	Q6ZRC1	276 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	DDX42	Q86XP3	938 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	CHCHD4	Q8N4Q1	142 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	MINDY1	Q8N5J2	469 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	MYCT1	Q8N699	235 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	RLN3	Q8WXF3	142 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADAMTS14	Q8WXS8	1223 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	SPATA17	Q96L03	361 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ST6GALNAC4	Q9H4F1	302 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	CCDC86	Q9H6F5	360 aa	Known RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	AGO2	Q9UKV8	859 aa	Known RBP	13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	L1RE1	Q9UN81	338 aa		13.32	□□□□□ -0.28
CAPN1-223	ENST00000533079	ANAPC1	Q9H1A4	1944 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079		A0A1W2PQD8	194 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	LEFTY2	O00292	366 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	ARHGAP33	O14559	1287 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	OLFM2	O95897	454 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	DDIT3	P35638	169 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	GRIA2	P42262	883 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	KIR2DL1	P43626	348 aa	Predicted RBP	13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	LHX1	P48742	406 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	SLC7A9	P82251	487 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	SCAP	Q12770	1279 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	RILPL1	Q5EBL4	403 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	VSTM1	Q6UX27	236 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	FILIP1	Q7Z7B0	1213 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	GPBP1	Q86WP2	473 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	CCDC83	Q8IWF9	413 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	HMGB4	Q8WW32	186 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	HVCN1	Q96D96	273 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	AK8	Q96MA6	479 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	LINC00597	Q9H2U6	94 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	SCUBE2	Q9NQ36	999 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	GDAP2	Q9NXN4	497 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	TRPM5	Q9NZQ8	1165 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	ITGA11	Q9UKX5	1188 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	LIMCH1	Q9UPQ0	1083 aa		13.31	□□□□□ -0.28
CAPN1-223	ENST00000533079	TBCA	O75347	108 aa	Known RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ZNF217	O75362	1048 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADH5	P11766	374 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	CD59	P13987	128 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	POLR2B	P30876	1174 aa	Known RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	TIE1	P35590	1138 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	POSTN	Q15063	836 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	DHCR24	Q15392	516 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	TRIP6	Q15654	476 aa	Known RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	MAPRE1	Q15691	268 aa	Known RBP	13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	COL28A1	Q2UY09	1125 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	NUDT18	Q6ZVK8	323 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	SCN4B	Q8IWT1	228 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADGRF2	Q8IZF7	708 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	ADGRG2	Q8IZP9	1017 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	PGBD3	Q8N328	593 aa		13.3	□□□□□ -0.28
CAPN1-223	ENST00000533079	TOP6BL	Q8N6T0	577 aa		13.3	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms