RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MRPL45Q9BRJ2 306 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 PACSIN1Q9BY11 444 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 STK33Q9BYT3 514 aa9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 PRRC2BQ5JSZ5 2229 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-209ENST00000509277 A0A087X0T9 212 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 KPNA7A9QM74 516 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CD4P01730 458 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM228BP0C875 321 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 HOXC8P31273 242 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 NDST1P52848 882 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 HHATQ5VTY9 493 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 C9orf57Q5W0N0 161 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 WDR59Q6PJI9 974 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ZNF571Q7Z3V5 609 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 VSIG1Q86XK7 387 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 PALB2Q86YC2 1186 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ZC3H3Q8IXZ2 948 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 STKLD1Q8NE28 680 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 APPL2Q8NEU8 664 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 GRXCR1A8MXD5 290 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SPTLC1O15269 473 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SHBGP04278 402 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CFHP08603 1231 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 NFIL3Q16649 462 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CFAP221Q4G0U5 840 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 DTX3LQ8TDB6 740 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ARHGEF2Q92974 986 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 C11orf70Q9BRQ4 267 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SCN1AP35498 2009 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SYNJ2BP-COX16A0A087WUM0 186 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 DDHD2O94830 711 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 GJB6O95452 261 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ETS2P15036 469 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 FERP16591 822 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ALDH7A1P49419 539 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 RPS6KA3P51812 740 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 RAD23BP54727 409 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TUBB4BP68371 445 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ELF3P78545 371 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TUBB2AQ13885 445 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CLLU1OSQ5K130 101 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TMEM154Q6P9G4 183 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 DAAM2Q86T65 1068 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SCN4BQ8IWT1 228 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 LMNTD2Q8IXW0 634 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 USP38Q8NB14 1042 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 AUTS2Q8WXX7 1259 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 RAPGEF5Q92565 580 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SENP8Q96LD8 212 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TUBB2BQ9BVA1 445 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 DPEP3Q9H4B8 488 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CHST12Q9NRB3 414 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TBC1D13Q9NVG8 400 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TAS2R14Q9NYV8 317 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 COX16Q9P0S2 106 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 CXXC1Q9P0U4 656 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 TBK1Q9UHD2 729 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 REXO2Q9Y3B8 237 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 SLC4A7Q9Y6M7 1214 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 ITIH6Q6UXX5 1313 aa9.12□□□□□ -0.95
LIMCH1-209ENST00000509277 M0QYV0 167 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 CLDN5O00501 218 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 GRAP2O75791 330 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ASS1P00966 412 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 SERPING1P05155 500 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 RPL17P18621 184 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 LMO2P25791 158 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 RAB27AP51159 221 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 DBN1Q16643 649 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 FAM171A1Q5VUB5 890 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ALKBH5Q6P6C2 394 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 C3orf58Q8NDZ4 430 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ZNF560Q96MR9 790 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 TWNKQ96RR1 684 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 DDX50Q9BQ39 737 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 MIS12Q9H081 205 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ACTR5Q9H9F9 607 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 USTQ9Y2C2 406 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 C15orf41Q9Y2V0 281 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 C9IYK1 514 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 PITPNM1O00562 1244 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 RASSF9O75901 435 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 FGBP02675 491 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ZCCHC18P0CG32 403 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 CCDC130P13994 396 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 PECAM1P16284 738 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 GNL1P36915 607 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 MSH2P43246 934 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 KYAT1Q16773 422 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 PLEKHG4Q58EX7 1191 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 CYP4A22Q5TCH4 519 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 RNF220Q5VTB9 566 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 CAPN12Q6ZSI9 719 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 NOP9Q86U38 636 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ZC3H18Q86VM9 953 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ADGRF2Q8IZF7 708 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 SLC43A3Q8NBI5 491 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 LMO3Q8TAP4 145 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 SDCBP2Q9H190 292 aa9.11□□□□□ -0.95
LIMCH1-209ENST00000509277 ABCF3Q9NUQ8 709 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms