RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP49	YGL172W	SCW10	Q04951	389 aa		5.03	□□□□□ -1.6
NUP49	YGL172W	RDS3	Q06835	107 aa	Predicted RBP	5.03	□□□□□ -1.6
NUP49	YGL172W	ZEO1	Q08245	113 aa		5.03	□□□□□ -1.6
NUP49	YGL172W	SNU23	Q12368	194 aa	Predicted RBP	5.03	□□□□□ -1.6
NUP49	YGL172W	RPL12A	P0CX53	165 aa	Known RBP	5.02	□□□□□ -1.61
NUP49	YGL172W	RPL12B	P0CX54	165 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	HMRA1	P0CY11	126 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	AGA1	P32323	725 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	VHS2	P40463	436 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	PAU5	P43575	122 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	COX16	P47081	118 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	HHO1	P53551	258 aa		5.02	□□□□□ -1.61
NUP49	YGL172W	YCR001W	P25347	104 aa		5.01	□□□□□ -1.61
NUP49	YGL172W	CGR1	P53188	120 aa		5.01	□□□□□ -1.61
NUP49	YGL172W	YGR026W	P53217	278 aa		5.01	□□□□□ -1.61
NUP49	YGL172W	YBR013C	P38215	129 aa		5	□□□□□ -1.61
NUP49	YGL172W	IRC22	P40006	225 aa		5	□□□□□ -1.61
NUP49	YGL172W	THG1	P53215	237 aa	Known RBP	5	□□□□□ -1.61
NUP49	YGL172W	RPS8A	P0CX39	200 aa	Known RBP	4.99	□□□□□ -1.61
NUP49	YGL172W	RPS8B	P0CX40	200 aa	Known RBP	4.99	□□□□□ -1.61
NUP49	YGL172W	RPL16B	P26785	198 aa	Known RBP	4.99	□□□□□ -1.61
NUP49	YGL172W	PAU7	P39545	55 aa		4.99	□□□□□ -1.61
NUP49	YGL172W	YDR366C	P87287	132 aa		4.99	□□□□□ -1.61
NUP49	YGL172W	YBR200W-A	Q3E755	54 aa		4.99	□□□□□ -1.61
NUP49	YGL172W	YHR140W	P38842	239 aa		4.98	□□□□□ -1.61
NUP49	YGL172W	RRT13	P40042	185 aa		4.98	□□□□□ -1.61
NUP49	YGL172W	GTT1	P40582	234 aa		4.98	□□□□□ -1.61
NUP49	YGL172W	SDS23	P53172	527 aa		4.98	□□□□□ -1.61
NUP49	YGL172W	GTO3	Q04806	366 aa		4.98	□□□□□ -1.61
NUP49	YGL172W	RPL27A	P0C2H6	136 aa	Known RBP	4.97	□□□□□ -1.61
NUP49	YGL172W	ZRT1	P32804	376 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	BRP1	P53194	125 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	GPI19	Q04082	140 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	DXO1	Q06349	442 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	POM33	Q12164	279 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	YCR075W-A	Q3E830	75 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	PAU19	P0CE85	124 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	PAU21	P0CE86	164 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	PAU22	P0CE87	164 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	PAU3	P25610	124 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	HAL1	Q01766	294 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	SGF11	Q03067	99 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	AIM34	Q03673	198 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	YML108W	Q03759	105 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	ARC18	Q05933	178 aa	Known RBP	4.97	□□□□□ -1.61
NUP49	YGL172W	VAM10	Q08474	114 aa		4.97	□□□□□ -1.61
NUP49	YGL172W	RPL23A	P0CX41	137 aa	Known RBP	4.96	□□□□□ -1.62
NUP49	YGL172W	RPL23B	P0CX42	137 aa	Known RBP	4.96	□□□□□ -1.62
NUP49	YGL172W	YPS5	P53057	165 aa		4.96	□□□□□ -1.62
NUP49	YGL172W	POR1	P04840	283 aa	Known RBP	4.95	□□□□□ -1.62
NUP49	YGL172W	SUR2	P38992	349 aa		4.95	□□□□□ -1.62
NUP49	YGL172W	YCH1	P42937	148 aa		4.95	□□□□□ -1.62
NUP49	YGL172W	WIP1	Q2V2P8	89 aa		4.95	□□□□□ -1.62
NUP49	YGL172W	MRPL28	P36527	147 aa		4.94	□□□□□ -1.62
NUP49	YGL172W	TVP18	Q04767	167 aa		4.94	□□□□□ -1.62
NUP49	YGL172W	YLR042C	Q07990	161 aa		4.94	□□□□□ -1.62
NUP49	YGL172W	FSF1	Q12029	327 aa	Known RBP	4.94	□□□□□ -1.62
NUP49	YGL172W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.94	□□□□□ -1.62
NUP49	YGL172W	YCR024C-B	Q3E7Z8	88 aa		4.94	□□□□□ -1.62
NUP49	YGL172W	SEC4	P07560	215 aa	Known RBP	4.93	□□□□□ -1.62
NUP49	YGL172W	YNL217W	P40152	326 aa		4.93	□□□□□ -1.62
NUP49	YGL172W	YKR032W	P36127	104 aa		4.92	□□□□□ -1.62
NUP49	YGL172W	YCR023C	P25351	611 aa		4.91	□□□□□ -1.62
NUP49	YGL172W	KTI12	P34253	313 aa	Known RBP	4.91	□□□□□ -1.62
NUP49	YGL172W	YPT53	P36019	220 aa		4.91	□□□□□ -1.62
NUP49	YGL172W	KRE9	P39005	276 aa		4.91	□□□□□ -1.62
NUP49	YGL172W	CYT2	Q00873	224 aa		4.91	□□□□□ -1.62
NUP49	YGL172W	DGA1	Q08650	418 aa		4.91	□□□□□ -1.62
NUP49	YGL172W	PET8	P38921	284 aa		4.9	□□□□□ -1.62
NUP49	YGL172W	ARL3	Q02804	198 aa		4.9	□□□□□ -1.62
NUP49	YGL172W	YGR240C-A	Q3E786	66 aa		4.9	□□□□□ -1.62
NUP49	YGL172W	RPL42A	P0CX27	106 aa	Known RBP	4.89	□□□□□ -1.63
NUP49	YGL172W	RPL42B	P0CX28	106 aa	Known RBP	4.89	□□□□□ -1.63
NUP49	YGL172W	TEM1	P38987	245 aa		4.89	□□□□□ -1.63
NUP49	YGL172W	CMC2	Q3E7A4	109 aa		4.89	□□□□□ -1.63
NUP49	YGL172W	SEC72	P39742	193 aa	Known RBP	4.89	□□□□□ -1.63
NUP49	YGL172W	ATP23	P53722	227 aa		4.89	□□□□□ -1.63
NUP49	YGL172W	CRC1	Q12289	327 aa		4.89	□□□□□ -1.63
NUP49	YGL172W	SAL1	D6W196	494 aa		4.88	□□□□□ -1.63
NUP49	YGL172W	POP7	P38291	140 aa		4.88	□□□□□ -1.63
NUP49	YGL172W	DCV1	P43595	202 aa		4.88	□□□□□ -1.63
NUP49	YGL172W	YPR014C	Q6B0W2	109 aa		4.88	□□□□□ -1.63
NUP49	YGL172W	YNL200C	P40165	246 aa	Known RBP	4.87	□□□□□ -1.63
NUP49	YGL172W	RPR2	P40571	144 aa		4.87	□□□□□ -1.63
NUP49	YGL172W	CDC40	P40968	455 aa	Predicted RBP	4.87	□□□□□ -1.63
NUP49	YGL172W	PMP3	P87284	55 aa		4.87	□□□□□ -1.63
NUP49	YGL172W	YER076C	P40049	302 aa		4.86	□□□□□ -1.63
NUP49	YGL172W	YIL014C-A	Q02598	104 aa		4.86	□□□□□ -1.63
NUP49	YGL172W	AQY1	P0CD91	305 aa		4.85	□□□□□ -1.63
NUP49	YGL172W	YGL118C	P53132	145 aa		4.85	□□□□□ -1.63
NUP49	YGL172W	PFY1	P07274	126 aa		4.84	□□□□□ -1.63
NUP49	YGL172W	UBC5	P15732	148 aa		4.84	□□□□□ -1.63
NUP49	YGL172W	PRE1	P22141	198 aa	Known RBP	4.84	□□□□□ -1.63
NUP49	YGL172W	GSP1	P32835	219 aa	Known RBP	4.84	□□□□□ -1.63
NUP49	YGL172W	GSP2	P32836	220 aa	Known RBP	4.84	□□□□□ -1.63
NUP49	YGL172W	YKL070W	P36087	169 aa		4.84	□□□□□ -1.63
NUP49	YGL172W	YKR070W	P36151	352 aa	Known RBP	4.84	□□□□□ -1.63
NUP49	YGL172W	YER134C	P40081	178 aa		4.84	□□□□□ -1.63
NUP49	YGL172W	MGR2	Q02889	113 aa		4.84	□□□□□ -1.63
NUP49	YGL172W	YBR209W	P38311	105 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 46.9 ms