RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CES5AQ6NT32 575 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 CCDC186Q7Z3E2 898 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 CNGA4Q8IV77 575 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 C12orf29Q8N999 325 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 TC2NQ8N9U0 490 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 STKLD1Q8NE28 680 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 GPR152Q8TDT2 470 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 SHC3Q92529 594 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 JAKMIP2Q96AA8 810 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 PCED1BQ96HM7 432 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 SPAG5Q96R06 1193 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 DNAJC7Q99615 494 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 GPR88Q9GZN0 384 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 ELOVL4Q9GZR5 314 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 POMKQ9H5K3 350 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 CISHQ9NSE2 258 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 PCDHB5Q9Y5E4 795 aa15.94■□□□□ 0.14
TRIM28-207ENST00000597136 LRRC53A6NM62 1247 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 F8VZ95 297 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 FOXN3O00409 490 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 CILPO75339 1184 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 HNRNPA1P09651 372 aaKnown RBP eCLIP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 HAPLN1P10915 354 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 ACO1P21399 889 aaKnown RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 GSDMDP57764 484 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 CYP27A1Q02318 531 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 CBX2Q14781 532 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 ARID5BQ14865 1188 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 SMAD2Q15796 467 aaKnown RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 AAK1Q2M2I8 961 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 ATAT1Q5SQI0 421 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 SDHAF4Q5VUM1 108 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 PAQR9Q6ZVX9 377 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 GRASPQ7Z6J2 395 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 UBR7Q8N806 425 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 B3GALNT2Q8NCR0 500 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 OR8K1Q8NGG5 319 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 MYCBPAPQ8TBZ2 947 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 MYLPFQ96A32 169 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 B3GNT5Q9BYG0 378 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 PIDD1Q9HB75 910 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 TMEM30AQ9NV96 361 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 DNMT3BQ9UBC3 853 aaKnown RBP15.93■□□□□ 0.14
TRIM28-207ENST00000597136 YIPF1Q9Y548 306 aa15.93■□□□□ 0.14
TRIM28-207ENST00000597136 NRG2O14511 850 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 LRG1P02750 347 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 PNMA6AP0CW24 399 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 ATF6P18850 670 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 BDNFP23560 247 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 CACNA2D1P54289 1103 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 NFE2Q16621 373 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 DDR2Q16832 855 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 MGAT5BQ3V5L5 792 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 ELMSAN1Q6PJG2 1045 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 UNC93AQ86WB7 457 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 HS6ST3Q8IZP7 471 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 CRYBG2Q8N1P7 616 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SPPL2BQ8TCT7 592 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 GIPC2Q8TF65 315 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SEPT5Q99719 369 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 NUCKS1Q9H1E3 243 aaKnown RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 ABHD10Q9NUJ1 306 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 MAFFQ9ULX9 164 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 CALCAP01258 141 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 PTMAP06454 111 aaKnown RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SP100P23497 879 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 HOXA9P31269 272 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SOX5P35711 763 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 STAT1P42224 750 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 RAD23BP54727 409 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 YWHAEP62258 255 aaKnown RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SMARCB1Q12824 385 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SPATA2LQ8IUW3 424 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 FAM71AQ8IYT1 594 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SLC4A11Q8NBS3 891 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 C2orf15Q8WU43 125 aaKnown RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 SYN2Q92777 582 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 NECAB3Q96P71 396 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 PANX2Q96RD6 677 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 ZNF518BQ9C0D4 1074 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 FAM124BQ9H5Z6 455 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-207ENST00000597136 FAM49BQ9NUQ9 324 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 AIPL1Q9NZN9 384 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 CNTN6Q9UQ52 1028 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 MUC3AQ02505 3323 aa15.92■□□□□ 0.14
TRIM28-207ENST00000597136 KIF26AQ9ULI4 1882 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 NUP210Q8TEM1 1887 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 HELZP42694 1942 aaKnown RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 MYOFQ9NZM1 2061 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 CCDC130P13994 396 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 HNRNPH3P31942 346 aaKnown RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 MTHFRP42898 656 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 TUFMP49411 452 aaKnown RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 TSR1Q2NL82 804 aaKnown RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 PUS10Q3MIT2 529 aaKnown RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 SFMBT2Q5VUG0 894 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 E4F1Q66K89 784 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-207ENST00000597136 SMYD5Q6GMV2 418 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 RTL10Q7L3V2 364 aa15.91■□□□□ 0.14
TRIM28-207ENST00000597136 SCN4BQ8IWT1 228 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms