RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SHOX2O60902 331 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 ABCB1P08183 1280 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 ENO2P09104 434 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 SERPINB9P50453 376 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 EML4Q9HC35 981 aaKnown RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 LMCD1Q9NZU5 365 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 PCDHGC5Q9Y5F6 944 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 PNPLA6Q8IY17 1366 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 KRT36O76013 467 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 ZBED1O96006 694 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 TFAMQ00059 246 aaKnown RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 LAMC2Q13753 1193 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 TYSND1Q2T9J0 566 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 ZFP69Q49AA0 526 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 C6orf183Q5T699 404 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 PI4K2BQ8TCG2 481 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 SH3RF3Q8TEJ3 882 aaPredicted RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 VPS39Q96JC1 886 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 MXD3Q9BW11 206 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 RNF146Q9NTX7 359 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 NMRK1Q9NWW6 199 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 IRF6O14896 467 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 PLCG1P19174 1290 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 DYNLT1P63172 113 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 TRAF3Q13114 568 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 SPIDRQ14159 915 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 SVOPQ8N4V2 548 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 EIF1ADQ8N9N8 165 aaKnown RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 DNAAF3Q8N9W5 541 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 STRBPQ96SI9 672 aaKnown RBP13.8□□□□□ -0.2
USP40-208ENST00000450966 PARVAQ9NVD7 372 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 ADAM30Q9UKF2 790 aa13.8□□□□□ -0.2
USP40-208ENST00000450966 CCDC162PA2VCL2 907 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 EFCAB14O75071 495 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 LRRN2O75325 713 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 GYPCP04921 128 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 RAG1P15918 1043 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 PRCPP42785 496 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 NUDT2P50583 147 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 TTMPQ5BVD1 217 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 POC5Q8NA72 575 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 TBCKQ8TEA7 893 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 CDV3Q9UKY7 258 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 USP32Q8NFA0 1604 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 USP42Q9H9J4 1324 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 KIF28PB7ZC32 967 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 SNX3O60493 162 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 SNX2O60749 519 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 SRGNP10124 158 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 RARGP13631 454 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 STX5Q13190 355 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 COG2Q14746 738 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 ANKRD13AQ8IZ07 590 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 MINDY2Q8NBR6 621 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 FAM20AQ96MK3 541 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 TMEM237Q96Q45 408 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 BAIAP2Q9UQB8 552 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 CAMTA2O94983 1202 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 EPN2O95208 641 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 DNAJC24Q6P3W2 148 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 KRT84Q9NSB2 600 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 MARCOQ9UEW3 520 aaPredicted RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 DMGDHQ9UI17 866 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 SETD1BQ9UPS6 1966 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 TSPAN4O14817 238 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 TNFRSF8P28908 595 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 FNTAP49354 379 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 RAB25P57735 213 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 NAB2Q15742 525 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 IQCF2Q8IXL9 164 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 KCTD6Q8NC69 237 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 RPF1Q9H9Y2 349 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 MRPL39Q9NYK5 338 aaKnown RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 A0A0G2JLW4 131 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 PI4K2BG5E9Z4 385 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 IL12AP29459 219 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 CDC25AP30304 524 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 STAT3P40763 770 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 ARID3BQ8IVW6 561 aaPredicted RBP13.79□□□□□ -0.2
USP40-208ENST00000450966 CCNYQ8ND76 341 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 PGM2Q96G03 612 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 PCDHB6Q9Y5E3 794 aa13.79□□□□□ -0.2
USP40-208ENST00000450966 CALB1P05937 261 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 SLC16A2P36021 539 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CLCN2P51788 898 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CCDC157Q569K6 752 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 TCHHL1Q5QJ38 904 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 CATSPER4Q7RTX7 472 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 ELOA2Q8IYF1 753 aaPredicted RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 RNF139Q8WU17 664 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 FAM151AQ8WW52 585 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 RMDN3Q96TC7 470 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 TMEM120AQ9BXJ8 343 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 C8orf4Q9NR00 106 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CYP26B1Q9NR63 512 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 MYL2P10916 166 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 GTF2A2P52657 109 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 ARPP19P56211 112 aa13.78□□□□□ -0.2
USP40-208ENST00000450966 CAPRIN1Q14444 709 aaKnown RBP13.78□□□□□ -0.2
USP40-208ENST00000450966 SNX17Q15036 470 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms