RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeast

Gene PRE3, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE3	YJL001W	DSK2	P48510	373 aa		4.27	□□□□□ -1.73
PRE3	YJL001W	TMA23	Q03525	211 aa		4.27	□□□□□ -1.73
PRE3	YJL001W	YMR007W	Q03675	126 aa		4.27	□□□□□ -1.73
PRE3	YJL001W	BER1	Q06688	274 aa	Known RBP	4.27	□□□□□ -1.73
PRE3	YJL001W	YOP1	Q12402	180 aa		4.27	□□□□□ -1.73
PRE3	YJL001W	YMR230W-A	Q3E7B5	62 aa		4.27	□□□□□ -1.73
PRE3	YJL001W	GCN3	P14741	305 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	DER1	P38307	211 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	COX14	P39103	70 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	TAD2	P47058	250 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	TOM7	P53507	60 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	YLR179C	Q06252	201 aa	Known RBP	4.26	□□□□□ -1.73
PRE3	YJL001W	YER078W-A	Q3E7A2	54 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	YLL066W-B	Q8TGJ7	56 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	YPL229W	Q99395	206 aa		4.26	□□□□□ -1.73
PRE3	YJL001W	CDC50	P25656	391 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	KRE9	P39005	276 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	SPC1	P46965	94 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	COA4	Q05809	96 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	FIT2	Q08906	153 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	YGL194C-A	Q2V2P6	80 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	YGR240C-A	Q3E786	66 aa		4.25	□□□□□ -1.73
PRE3	YJL001W	TRP1	P00912	224 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	SPO13	P23624	291 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	AHT1	P29589	182 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	TOA2	P32774	122 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	MRX11	Q03079	207 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	AVO2	Q04749	426 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	YMR253C	Q04835	414 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	PBA1	Q05778	276 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	ANT1	Q06497	328 aa		4.24	□□□□□ -1.73
PRE3	YJL001W	FCF2	Q12035	217 aa	Predicted RBP	4.24	□□□□□ -1.73
PRE3	YJL001W	MAG1	P22134	296 aa	Known RBP	4.23	□□□□□ -1.73
PRE3	YJL001W	QCR9	P22289	66 aa		4.23	□□□□□ -1.73
PRE3	YJL001W	RRT13	P40042	185 aa		4.23	□□□□□ -1.73
PRE3	YJL001W	YNR066C	P53752	436 aa		4.23	□□□□□ -1.73
PRE3	YJL001W	CPT1	P17898	393 aa		4.22	□□□□□ -1.73
PRE3	YJL001W	ASP1	P38986	381 aa	Predicted RBP	4.22	□□□□□ -1.73
PRE3	YJL001W	HTB2	P02294	131 aa		4.21	□□□□□ -1.74
PRE3	YJL001W	HHF1	P02309	103 aa	Known RBP	4.21	□□□□□ -1.74
PRE3	YJL001W	Q0255	P03881	472 aa		4.21	□□□□□ -1.74
PRE3	YJL001W	MRS1	P07266	363 aa		4.21	□□□□□ -1.74
PRE3	YJL001W	UBI4	P0CG63	381 aa	Known RBP	4.21	□□□□□ -1.74
PRE3	YJL001W	MRPL20	P22354	195 aa	Predicted RBP	4.21	□□□□□ -1.74
PRE3	YJL001W	HSP12	P22943	109 aa	Known RBP	4.21	□□□□□ -1.74
PRE3	YJL001W	YCH1	P42937	148 aa		4.21	□□□□□ -1.74
PRE3	YJL001W	JAC1	P53193	184 aa		4.21	□□□□□ -1.74
PRE3	YJL001W	RPL16B	P26785	198 aa	Known RBP	4.2	□□□□□ -1.74
PRE3	YJL001W	GCV3	P39726	170 aa	Predicted RBP	4.2	□□□□□ -1.74
PRE3	YJL001W	CDC40	P40968	455 aa	Predicted RBP	4.2	□□□□□ -1.74
PRE3	YJL001W	MRPL50	P53724	139 aa		4.2	□□□□□ -1.74
PRE3	YJL001W	YDR366C	P87287	132 aa		4.2	□□□□□ -1.74
PRE3	YJL001W	MRPS17	Q03246	237 aa	Predicted RBP	4.2	□□□□□ -1.74
PRE3	YJL001W	ATC1	Q04005	294 aa		4.2	□□□□□ -1.74
PRE3	YJL001W	YIL002W-A	Q3E7Z5	69 aa		4.2	□□□□□ -1.74
PRE3	YJL001W	RTC6	O14464	93 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	YNL217W	P40152	326 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	YMR141C	P40211	102 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	YJL028W	P47062	111 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	RIB4	P50861	169 aa	Predicted RBP	4.19	□□□□□ -1.74
PRE3	YJL001W	BRP1	P53194	125 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	ADD37	Q03233	198 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	YOR015W	Q12169	119 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	YCR024C-B	Q3E7Z8	88 aa		4.19	□□□□□ -1.74
PRE3	YJL001W	TRS20	P38334	175 aa		4.18	□□□□□ -1.74
PRE3	YJL001W	YBR292C	P38357	123 aa		4.18	□□□□□ -1.74
PRE3	YJL001W	HUA1	P40325	198 aa		4.18	□□□□□ -1.74
PRE3	YJL001W	RPL18A	P0CX49	186 aa	Known RBP	4.17	□□□□□ -1.74
PRE3	YJL001W	RPL18B	P0CX50	186 aa	Known RBP	4.17	□□□□□ -1.74
PRE3	YJL001W	KEG1	P43614	200 aa		4.17	□□□□□ -1.74
PRE3	YJL001W	RAV2	Q03956	351 aa		4.17	□□□□□ -1.74
PRE3	YJL001W	DPP1	Q05521	289 aa		4.17	□□□□□ -1.74
PRE3	YJL001W	ARO2	P28777	376 aa	Known RBP	4.16	□□□□□ -1.74
PRE3	YJL001W	ACP1	P32463	125 aa		4.16	□□□□□ -1.74
PRE3	YJL001W	MRPL28	P36527	147 aa		4.16	□□□□□ -1.74
PRE3	YJL001W	EMC5	P40540	141 aa		4.16	□□□□□ -1.74
PRE3	YJL001W	AIM34	Q03673	198 aa		4.16	□□□□□ -1.74
PRE3	YJL001W	SDO1	Q07953	250 aa	Known RBP	4.16	□□□□□ -1.74
PRE3	YJL001W	DFM1	Q12743	341 aa	Known RBP	4.16	□□□□□ -1.74
PRE3	YJL001W	YBR200W-A	Q3E755	54 aa		4.16	□□□□□ -1.74
PRE3	YJL001W	RPL33A	P05744	107 aa	Known RBP	4.15	□□□□□ -1.75
PRE3	YJL001W	RPL33B	P41056	107 aa	Known RBP	4.15	□□□□□ -1.75
PRE3	YJL001W	HAC1	P41546	238 aa		4.15	□□□□□ -1.75
PRE3	YJL001W	SMD3	P43321	101 aa	Known RBP	4.15	□□□□□ -1.75
PRE3	YJL001W	LOC1	P43586	204 aa	Predicted RBP	4.15	□□□□□ -1.75
PRE3	YJL001W	YJR085C	P47131	105 aa	Known RBP	4.15	□□□□□ -1.75
PRE3	YJL001W	YCL001W-A	P87012	153 aa		4.15	□□□□□ -1.75
PRE3	YJL001W	PLP1	Q04004	230 aa		4.15	□□□□□ -1.75
PRE3	YJL001W	RRT15	Q3E811	62 aa		4.15	□□□□□ -1.75
PRE3	YJL001W	YDR034C-A	P0C289	58 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	KTI12	P34253	313 aa	Known RBP	4.14	□□□□□ -1.75
PRE3	YJL001W	RPL14A	P36105	138 aa	Known RBP	4.14	□□□□□ -1.75
PRE3	YJL001W	AME1	P38313	324 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	RPL14B	P38754	138 aa	Known RBP	4.14	□□□□□ -1.75
PRE3	YJL001W	YHR173C	P38864	112 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	SPC25	P40014	221 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	YDR115W	Q04598	105 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	SME1	Q12330	94 aa	Predicted RBP	4.14	□□□□□ -1.75
PRE3	YJL001W	COX19	Q3E731	98 aa		4.14	□□□□□ -1.75
PRE3	YJL001W	YLR342W-A	Q3E810	57 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 38.8 ms