RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C ZEO1Q08245 113 aa3.13□□□□□ -1.91
CDC9YDL164C ADH3P07246 375 aaKnown RBP3.12□□□□□ -1.91
CDC9YDL164C UMP1P38293 148 aa3.12□□□□□ -1.91
CDC9YDL164C ECM34P38728 170 aa3.12□□□□□ -1.91
CDC9YDL164C YHL042WP38729 150 aa3.12□□□□□ -1.91
CDC9YDL164C NSA2P40078 261 aaKnown RBP3.12□□□□□ -1.91
CDC9YDL164C PHS1P40857 217 aa3.12□□□□□ -1.91
CDC9YDL164C CUP9P41817 306 aa3.12□□□□□ -1.91
CDC9YDL164C RIM9Q04734 239 aa3.12□□□□□ -1.91
CDC9YDL164C YDL241WQ07738 123 aa3.12□□□□□ -1.91
CDC9YDL164C YHR213W-AQ8TGT4 77 aa3.12□□□□□ -1.91
CDC9YDL164C YOR062CP36025 268 aa3.12□□□□□ -1.91
CDC9YDL164C PAM17P36147 197 aa3.12□□□□□ -1.91
CDC9YDL164C TVP23P38962 199 aa3.12□□□□□ -1.91
CDC9YDL164C LSM8P47093 109 aaKnown RBP3.12□□□□□ -1.91
CDC9YDL164C DSK2P48510 373 aa3.12□□□□□ -1.91
CDC9YDL164C FEX1Q08913 375 aa3.12□□□□□ -1.91
CDC9YDL164C MIG1P27705 504 aa3.11□□□□□ -1.91
CDC9YDL164C YPT31P38555 223 aaKnown RBP3.11□□□□□ -1.91
CDC9YDL164C YOR015WQ12169 119 aa3.11□□□□□ -1.91
CDC9YDL164C FZF1P32805 299 aa3.1□□□□□ -1.91
CDC9YDL164C SCP1Q08873 200 aa3.1□□□□□ -1.91
CDC9YDL164C YLR422WQ06409 1932 aa3.1□□□□□ -1.91
CDC9YDL164C FEX2Q08991 375 aa3.1□□□□□ -1.91
CDC9YDL164C FCF2Q12035 217 aaPredicted RBP3.1□□□□□ -1.91
CDC9YDL164C YEL073CP39974 107 aa3.09□□□□□ -1.91
CDC9YDL164C YNL217WP40152 326 aa3.09□□□□□ -1.91
CDC9YDL164C YGL230CP53074 147 aa3.09□□□□□ -1.91
CDC9YDL164C ANB1P19211 157 aa3.09□□□□□ -1.92
CDC9YDL164C MDH2P22133 377 aa3.09□□□□□ -1.92
CDC9YDL164C GTT1P40582 234 aa3.09□□□□□ -1.92
CDC9YDL164C YPI1P43587 155 aa3.09□□□□□ -1.92
CDC9YDL164C YNR064CP53750 290 aa3.09□□□□□ -1.92
CDC9YDL164C MED11Q99278 115 aa3.09□□□□□ -1.92
CDC9YDL164C SAS5Q99314 248 aa3.09□□□□□ -1.92
CDC9YDL164C RIF1P29539 1916 aa3.08□□□□□ -1.92
CDC9YDL164C FKS1P38631 1876 aaKnown RBP3.08□□□□□ -1.92
CDC9YDL164C YML122CQ03207 126 aa3.08□□□□□ -1.92
CDC9YDL164C UPS1Q05776 175 aa3.08□□□□□ -1.92
CDC9YDL164C YOR385WQ08909 290 aa3.08□□□□□ -1.92
CDC9YDL164C RAD6P06104 172 aa3.08□□□□□ -1.92
CDC9YDL164C MAK31P23059 88 aa3.08□□□□□ -1.92
CDC9YDL164C SDH4P37298 181 aa3.08□□□□□ -1.92
CDC9YDL164C YAE1P47118 141 aaPredicted RBP3.08□□□□□ -1.92
CDC9YDL164C EMC4P53073 190 aa3.08□□□□□ -1.92
CDC9YDL164C RSM27P53305 110 aa3.08□□□□□ -1.92
CDC9YDL164C SCS22Q6Q595 175 aa3.08□□□□□ -1.92
CDC9YDL164C SHH3Q04487 196 aa3.07□□□□□ -1.92
CDC9YDL164C MYO1P08964 1928 aa3.07□□□□□ -1.92
CDC9YDL164C BOL2P53082 120 aa3.07□□□□□ -1.92
CDC9YDL164C MRPS8Q03799 155 aa3.07□□□□□ -1.92
CDC9YDL164C IRC23Q08416 157 aa3.07□□□□□ -1.92
CDC9YDL164C TMC1Q08422 150 aaPredicted RBP3.07□□□□□ -1.92
CDC9YDL164C YGL194C-AQ2V2P6 80 aa3.07□□□□□ -1.92
CDC9YDL164C RPS23AP0CX29 145 aaKnown RBP3.06□□□□□ -1.92
CDC9YDL164C RPS23BP0CX30 145 aa3.06□□□□□ -1.92
CDC9YDL164C INO4P13902 151 aa3.06□□□□□ -1.92
CDC9YDL164C PEP8P40335 379 aa3.06□□□□□ -1.92
CDC9YDL164C TIR3P40552 269 aa3.06□□□□□ -1.92
CDC9YDL164C PAM16P42949 149 aa3.06□□□□□ -1.92
CDC9YDL164C NHP10Q03435 203 aa3.06□□□□□ -1.92
CDC9YDL164C ATG10Q07879 167 aa3.06□□□□□ -1.92
CDC9YDL164C YGR026WP53217 278 aa3.05□□□□□ -1.92
CDC9YDL164C YCL001W-AP87012 153 aa3.05□□□□□ -1.92
CDC9YDL164C YMR295CQ03559 197 aa3.05□□□□□ -1.92
CDC9YDL164C LIP1Q03579 150 aa3.05□□□□□ -1.92
CDC9YDL164C SFT2P38166 215 aa3.05□□□□□ -1.92
CDC9YDL164C NSE4P43124 402 aa3.05□□□□□ -1.92
CDC9YDL164C MOT1P32333 1867 aa3.04□□□□□ -1.92
CDC9YDL164C MSW1P04803 379 aa3.04□□□□□ -1.92
CDC9YDL164C GAA1P39012 614 aa3.04□□□□□ -1.92
CDC9YDL164C CCS1P40202 249 aaKnown RBP3.04□□□□□ -1.92
CDC9YDL164C SAY1P53324 424 aa3.04□□□□□ -1.92
CDC9YDL164C YOR097CQ12274 175 aaPredicted RBP3.04□□□□□ -1.92
CDC9YDL164C COX5BP00425 151 aa3.04□□□□□ -1.92
CDC9YDL164C ERV15P38312 142 aa3.04□□□□□ -1.92
CDC9YDL164C IPT1P38954 527 aa3.04□□□□□ -1.92
CDC9YDL164C YJR146WP47174 117 aa3.04□□□□□ -1.92
CDC9YDL164C UTH1P36135 365 aa3.03□□□□□ -1.92
CDC9YDL164C PHO88P38264 188 aaPredicted RBP3.03□□□□□ -1.92
CDC9YDL164C RCE1Q03530 315 aa3.03□□□□□ -1.92
CDC9YDL164C YCR075W-AQ3E830 75 aa3.03□□□□□ -1.92
CDC9YDL164C UBC5P15732 148 aa3.03□□□□□ -1.92
CDC9YDL164C YKR032WP36127 104 aa3.03□□□□□ -1.92
CDC9YDL164C UBR2Q07963 1872 aa3.02□□□□□ -1.93
CDC9YDL164C HSP26P15992 214 aaKnown RBP RIP-Chip data3.02□□□□□ -1.93not detected
CDC9YDL164C MZM1Q03429 123 aaPredicted RBP3.02□□□□□ -1.93
CDC9YDL164C YMR103CQ04436 120 aa3.02□□□□□ -1.93
CDC9YDL164C UTR5P32630 166 aa3.02□□□□□ -1.93
CDC9YDL164C YIR035CP40579 254 aa3.02□□□□□ -1.93
CDC9YDL164C GNA1P43577 159 aaPredicted RBP3.02□□□□□ -1.93
CDC9YDL164C ERG25P53045 309 aa3.02□□□□□ -1.93
CDC9YDL164C YGL260WP53056 76 aa3.02□□□□□ -1.93
CDC9YDL164C KTI11Q3E840 82 aa3.02□□□□□ -1.93
CDC9YDL164C RIM15P43565 1770 aa3.01□□□□□ -1.93
CDC9YDL164C YFR010W-AP0C5N0 62 aa3.01□□□□□ -1.93
CDC9YDL164C SEC59P20048 519 aa3.01□□□□□ -1.93
CDC9YDL164C SCM4P32564 187 aa3.01□□□□□ -1.93
CDC9YDL164C YKL044WP36092 106 aa3.01□□□□□ -1.93
CDC9YDL164C AIM18P38884 321 aa3.01□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 28.8 ms