RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 IER5Q5VY09 327 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 AP1ARQ63HQ0 302 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 TAF2Q6P1X5 1199 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 LRRC55Q6ZSA7 311 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 CEP68Q76N32 757 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 LRRC71Q8N4P6 559 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 DRAXINQ8NBI3 349 aaPredicted RBP12.27□□□□□ -0.44
LINC00538-201ENST00000626109 THAP3Q8WTV1 239 aaPredicted RBP12.27□□□□□ -0.44
LINC00538-201ENST00000626109 KIFAP3Q92845 792 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 HPS3Q969F9 1004 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 SPON2Q9BUD6 331 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 POLR3FQ9H1D9 316 aaPredicted RBP12.27□□□□□ -0.44
LINC00538-201ENST00000626109 PDLIM7Q9NR12 457 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 PCDHGA4Q9Y5G9 962 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 PCDHA2Q9Y5H9 948 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 DUSP10Q9Y6W6 482 aa12.27□□□□□ -0.44
LINC00538-201ENST00000626109 SMIM35A0A1B0GVV1 85 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 MTRF1O75570 445 aaKnown RBP12.27□□□□□ -0.45
LINC00538-201ENST00000626109 RPS6KA5O75582 802 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 RFPL1O75677 317 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 SERPING1P05155 500 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 EN2P19622 333 aaPredicted RBP12.27□□□□□ -0.45
LINC00538-201ENST00000626109 CLCN3P51790 818 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 KRT72Q14CN4 511 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 GLE1Q53GS7 698 aaKnown RBP12.27□□□□□ -0.45
LINC00538-201ENST00000626109 SLC39A5Q6ZMH5 540 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 FAM186BQ8IYM0 893 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 SPATA18Q8TC71 538 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 PSPC1Q8WXF1 523 aaKnown RBP12.27□□□□□ -0.45
LINC00538-201ENST00000626109 NINJ1Q92982 152 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 TMEM143Q96AN5 459 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 ZBTB9Q96C00 473 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 DNAJC19Q96DA6 116 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 ELAC1Q9H777 363 aaKnown RBP12.27□□□□□ -0.45
LINC00538-201ENST00000626109 GPRC5CQ9NQ84 441 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 EPS15L1Q9UBC2 864 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 HPCAL4Q9UM19 191 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 TFR2Q9UP52 801 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 AKT3Q9Y243 479 aa12.27□□□□□ -0.45
LINC00538-201ENST00000626109 ZNF263O14978 683 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 SMAD7O15105 426 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 TLR3O15455 904 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 RPLP2P05387 115 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 CHKAP35790 457 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 CDK7P50613 346 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 LIMK1P53667 647 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 SOX10P56693 466 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 PRPF4BQ13523 1007 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 TDRD12Q587J7 1177 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 WDR44Q5JSH3 913 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 PERM1Q5SV97 790 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 ALG1LQ6GMV1 187 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 NEK10Q6ZWH5 1172 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 CREG2Q8IUH2 290 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 TNS4Q8IZW8 715 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 LINC01465Q8N7H1 131 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 IFT74Q96LB3 600 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 OSBPL9Q96SU4 736 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 FAM49AQ9H0Q0 323 aaPredicted RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 PARVGQ9HBI0 331 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 TRMT13Q9NUP7 481 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 LARSQ9P2J5 1176 aaKnown RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 SUCLA2Q9P2R7 463 aaPredicted RBP12.26□□□□□ -0.45
LINC00538-201ENST00000626109 SQORQ9Y6N5 450 aa12.26□□□□□ -0.45
LINC00538-201ENST00000626109 RSPH10B2B2RC85 870 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RBAK-RBAKDNI3L0D1 243 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 ZNF185O15231 689 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 N4BP1O75113 896 aaKnown RBP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RNF40O75150 1001 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 MOCS3O95396 460 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 PLEKP08567 350 aaPredicted RBP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RSPH10BP0C881 870 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 GZMAP12544 262 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 GAP43P17677 238 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 ARL2P36404 184 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 MAN2A2P49641 1150 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RTP1P59025 263 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 MAPK7Q13164 816 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 SNX17Q15036 470 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 DDR2Q16832 855 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 CFAP221Q4G0U5 840 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 SWT1Q5T5J6 900 aaKnown RBP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 C1orf53Q5VUE5 145 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RUFY4Q6ZNE9 571 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 SPATC1Q76KD6 591 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 RSPH3Q86UC2 560 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 SERINC5Q86VE9 423 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 C17orf75Q9HAS0 396 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 POLD4Q9HCU8 107 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 FRMD3A2A2Y4 597 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 ASAP2O43150 1006 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 B4GALT4O60513 344 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 PQBP1O60828 265 aaKnown RBP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 MAP3K6O95382 1288 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 PLS3P13797 630 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 C2orf54Q08AI8 447 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 DMP1Q13316 513 aaPredicted RBP12.25□□□□□ -0.45
LINC00538-201ENST00000626109 DRP2Q13474 957 aa12.25□□□□□ -0.45
LINC00538-201ENST00000626109 MXD4Q14582 209 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms