RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 TXNDC11Q6PKC3 985 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 SHC4Q6S5L8 630 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 C4orf50Q6ZRC1 276 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 UNC13DQ70J99 1090 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 MON1AQ86VX9 555 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 WDR49Q8IV35 697 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 C12orf56Q8IXR9 622 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 ADGRF2Q8IZF7 708 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 PIP4P2Q8N4L2 257 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 GIPC2Q8TF65 315 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 MRPS31Q92665 395 aaKnown RBP7.09□□□□□ -1.27
SLIRP-203ENST00000554074 SECISBP2LQ93073 1101 aaKnown RBP7.09□□□□□ -1.27
SLIRP-203ENST00000554074 DHX58Q96C10 678 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 FAM83CQ9BQN1 747 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 MTMR12Q9C0I1 747 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 PCIF1Q9H4Z3 704 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 HSPBP1Q9NZL4 362 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 CDH9Q9ULB4 789 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 SSUH2Q9Y2M2 353 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 R3HCC1Q9Y3T6 440 aaKnown RBP7.09□□□□□ -1.27
SLIRP-203ENST00000554074 SNX9Q9Y5X1 595 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 DMDP11532 3685 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 CEP192Q8TEP8 1941 aa7.09□□□□□ -1.27
SLIRP-203ENST00000554074 PTPRJQ12913 1337 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 THADAQ6YHU6 1953 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SLC38A8A6NNN8 435 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 TGFB1I1O43294 461 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 F13A1P00488 732 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 KRT19P08727 400 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 ZSCAN22P10073 491 aaPredicted RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 TCF3P15923 654 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 WARSP23381 471 aaKnown RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 CYP2F1P24903 491 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 PI4KAP42356 2102 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 PDE6CP51160 858 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 AMPD2Q01433 879 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 CCINQ13939 588 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 GAS6Q14393 721 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 PSMD6Q15008 389 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SNRNP35Q16560 246 aaKnown RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 VSTM1Q6UX27 236 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 HS2ST1Q7LGA3 356 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 OSTM1Q86WC4 334 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 CBWD2Q8IUF1 395 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SPATA2LQ8IUW3 424 aaPredicted RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 KIAA2013Q8IYS2 634 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 KIAA1958Q8N8K9 716 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 MAB21L3Q8N8X9 362 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 XXYLT1Q8NBI6 393 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 GLIS3Q8NEA6 775 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 OR5B17Q8NGF7 314 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 GOLGA5Q8TBA6 731 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 TMEM174Q8WUU8 243 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SCFD1Q8WVM8 642 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 KBTBD7Q8WVZ9 684 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 USP13Q92995 863 aaPredicted RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 HPDLQ96IR7 371 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SPATA17Q96L03 361 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 HINFPQ9BQA5 517 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SYT15Q9BQS2 421 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 PI4K2AQ9BTU6 479 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 AGPAT3Q9NRZ7 376 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 TDP1Q9NUW8 608 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 FAM13BQ9NYF5 915 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 DLL3Q9NYJ7 618 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 GTSE1Q9NYZ3 720 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 EHD2Q9NZN4 543 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 NCDNQ9UBB6 729 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 TFIP11Q9UBB9 837 aaKnown RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 GTF3C4Q9UKN8 822 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 CFAP45Q9UL16 551 aa7.08□□□□□ -1.28
SLIRP-203ENST00000554074 SMG5Q9UPR3 1016 aaKnown RBP7.08□□□□□ -1.28
SLIRP-203ENST00000554074 CNOT1A5YKK6 2376 aaKnown RBP7.07□□□□□ -1.28
SLIRP-203ENST00000554074 CCDC163A0A0D9SF12 145 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 K7ESF4 209 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 TRDMT1O14717 391 aaKnown RBP7.07□□□□□ -1.28
SLIRP-203ENST00000554074 POLR2DO15514 142 aaKnown RBP7.07□□□□□ -1.28
SLIRP-203ENST00000554074 LRP3O75074 770 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 TACC1O75410 805 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 TADA3O75528 432 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 MYL1P05976 194 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 USP17L7P0C7H9 530 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 TNNI1P19237 187 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 SDHBP21912 280 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 ACAT1P24752 427 aaKnown RBP7.07□□□□□ -1.28
SLIRP-203ENST00000554074 SOX9P48436 509 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 PPP3CCP48454 512 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 GPR15P49685 360 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 AP3M2P53677 418 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 SATB1Q01826 763 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 FAM160A1Q05DH4 1040 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 CYP24A1Q07973 514 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 USP4Q13107 963 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 RUNX3Q13761 415 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 PUM1Q14671 1186 aaKnown RBP eCLIP7.07□□□□□ -1.281e-6■■■□□ 15.3
SLIRP-203ENST00000554074 PDGFRLQ15198 375 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 DDR2Q16832 855 aa7.07□□□□□ -1.28
SLIRP-203ENST00000554074 KNOP1Q1ED39 458 aaKnown RBP7.07□□□□□ -1.28
SLIRP-203ENST00000554074 TMEM196Q5HYL7 178 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms