RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 EMID1Q96A84 441 aaPredicted RBP19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 HPDLQ96IR7 371 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 TMEM121Q9BTD3 319 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 SYNCQ9H7C4 482 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 SAE1Q9UBE0 346 aaPredicted RBP19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 AGAP1Q9UPQ3 857 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 COL1A2P08123 1366 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 SCN1AP35498 2009 aa19.51■□□□□ 0.71
PRPF40B-208ENST00000548436 PDHXO00330 501 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 TSPAN1O60635 241 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 SNAI1O95863 264 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CPP00450 1065 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 MAGEA4P43358 317 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CCNA1P78396 465 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 ZNF268Q14587 947 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 RNF187Q5TA31 235 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CYP4X1Q8N118 509 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CCDC134Q9H6E4 229 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CYP3A43Q9HB55 503 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 WDR35Q9P2L0 1181 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 H3BRB1 525 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 M0QYV0 167 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 ITGAVP06756 1048 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 GPD2P43304 727 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 DYNLT1P63172 113 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 GPR162Q16538 588 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 MARCH8Q5T0T0 291 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 GKAP1Q5VSY0 366 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 VSTM1Q6UX27 236 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 CACNA2D3Q8IZS8 1091 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 SLC35B2Q8TB61 432 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 GTF3C2Q8WUA4 911 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 FOXP3Q9BZS1 431 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 TUT1Q9H6E5 874 aaKnown RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 TPX2Q9ULW0 747 aaKnown RBP19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 PCNTO95613 3336 aa19.5■□□□□ 0.71
PRPF40B-208ENST00000548436 KRT7P08729 469 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 CD48P09326 243 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 KDELR1P24390 212 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 GABRB2P47870 512 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 IFNAR2P48551 515 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 PLCB3Q01970 1234 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 CYP4F22Q6NT55 531 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 PACS2Q86VP3 889 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 LRRC34Q8IZ02 419 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 UBA3Q8TBC4 463 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 MCRS1Q96EZ8 462 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 CABS1Q96KC9 395 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 HEXIM2Q96MH2 286 aaKnown RBP19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 SAYSD1Q9NPB0 183 aa19.49■□□□□ 0.71
PRPF40B-208ENST00000548436 TMEM120BA0PK00 339 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 PECAM1P16284 738 aaPredicted RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 CYP3A5P20815 502 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 MKRN3Q13064 507 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 TAZQ16635 292 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 HADHQ16836 314 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 DPH6Q7L8W6 267 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 MS4A4AQ96JQ5 239 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 ACAP3Q96P50 834 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 DPP3Q9NY33 737 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 TBK1Q9UHD2 729 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 PCSK1NQ9UHG2 260 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 LGALS13Q9UHV8 139 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 NAALADL1Q9UQQ1 740 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 EFR3BQ9Y2G0 817 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 A0A1B0GUA9 196 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 BTBD19C9JJ37 291 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 SGK1O00141 431 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 CST8O60676 142 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 VDRP11473 427 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 P4HA1P13674 534 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 ATP5DP30049 168 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 NDST1P52848 882 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 OTUD4Q01804 1114 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 FASTKD3Q14CZ7 662 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 TAF5Q15542 800 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 GRIK4Q16099 956 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 RNASEH2BQ5TBB1 312 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 ACTL9Q8TC94 416 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 CXCL16Q9H2A7 254 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 C10orf88Q9H8K7 445 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 ITGA11Q9UKX5 1188 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 BARX2Q9UMQ3 279 aaPredicted RBP19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 C2CD2Q9Y426 696 aa19.48■□□□□ 0.71
PRPF40B-208ENST00000548436 IFNB1P01574 187 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 HMGCRP04035 888 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 SMPD1P17405 629 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 MIPP30301 263 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 PDE4CQ08493 712 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 INCA1Q0VD86 236 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 STAT4Q14765 748 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 MORF4L2Q15014 288 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 LRRC14Q15048 493 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 KYAT1Q16773 422 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 CCDC142Q17RM4 750 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 MGARPQ8TDB4 240 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 OSBPL7Q9BZF2 842 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 PCDH9Q9HC56 1237 aa19.47■□□□□ 0.71
PRPF40B-208ENST00000548436 EURLQ9NYK6 297 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms