RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeastyeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
WHI3YNL197C CIN5P40917 295 aa1.68□□□□□ -2.14
WHI3YNL197C IRC19Q07843 230 aa1.68□□□□□ -2.14
WHI3YNL197C ADE6P38972 1358 aaKnown RBP1.68□□□□□ -2.14
WHI3YNL197C TRS20P38334 175 aa1.68□□□□□ -2.14
WHI3YNL197C GPI2P46961 280 aa1.68□□□□□ -2.14
WHI3YNL197C RCF2P53721 224 aa1.68□□□□□ -2.14
WHI3YNL197C SHB17P36136 271 aaKnown RBP1.67□□□□□ -2.14
WHI3YNL197C YDR366CP87287 132 aa1.67□□□□□ -2.14
WHI3YNL197C COF1Q03048 143 aaKnown RBP1.67□□□□□ -2.14
WHI3YNL197C NMA1Q06178 401 aaKnown RBP1.67□□□□□ -2.14
WHI3YNL197C YPR203WQ08994 102 aa1.67□□□□□ -2.14
WHI3YNL197C FMN1Q03778 218 aa1.67□□□□□ -2.14
WHI3YNL197C CSN9Q03981 162 aa1.67□□□□□ -2.14
WHI3YNL197C RRT7Q07829 113 aa1.67□□□□□ -2.14
WHI3YNL197C VAR1P02381 398 aa1.66□□□□□ -2.14
WHI3YNL197C MRPL15P36523 253 aa1.66□□□□□ -2.14
WHI3YNL197C CYC2P38909 366 aa1.66□□□□□ -2.14
WHI3YNL197C YGL230CP53074 147 aa1.66□□□□□ -2.14
WHI3YNL197C COX5BP00425 151 aa1.65□□□□□ -2.15
WHI3YNL197C YEL014CP39999 101 aa1.65□□□□□ -2.15
WHI3YNL197C YCL001W-AP87012 153 aa1.65□□□□□ -2.15
WHI3YNL197C TAF2P23255 1407 aa1.64□□□□□ -2.15
WHI3YNL197C HSP150P32478 413 aa1.64□□□□□ -2.15
WHI3YNL197C SUI1P32911 108 aaKnown RBP1.64□□□□□ -2.15
WHI3YNL197C KEI1Q06346 221 aa1.64□□□□□ -2.15
WHI3YNL197C RIF1P29539 1916 aa1.64□□□□□ -2.15
WHI3YNL197C YGR039WP53225 103 aa1.63□□□□□ -2.15
WHI3YNL197C RPC19P28000 142 aaKnown RBP1.63□□□□□ -2.15
WHI3YNL197C YHL037CP38733 133 aa1.63□□□□□ -2.15
WHI3YNL197C YHR140WP38842 239 aa1.63□□□□□ -2.15
WHI3YNL197C RPL14AP36105 138 aaKnown RBP1.62□□□□□ -2.15
WHI3YNL197C RPL14BP38754 138 aaKnown RBP1.62□□□□□ -2.15
WHI3YNL197C IPT1P38954 527 aa1.62□□□□□ -2.15
WHI3YNL197C APS3P47064 194 aa1.62□□□□□ -2.15
WHI3YNL197C HHO1P53551 258 aa1.62□□□□□ -2.15
WHI3YNL197C ATP19P81451 68 aa1.62□□□□□ -2.15
WHI3YNL197C FIT1Q04433 528 aa1.62□□□□□ -2.15
WHI3YNL197C SPC3Q12133 184 aa1.62□□□□□ -2.15
WHI3YNL197C KIN28P06242 306 aa1.61□□□□□ -2.15
WHI3YNL197C YGR042WP53227 271 aa1.61□□□□□ -2.15
WHI3YNL197C CDC39P25655 2108 aaKnown RBP1.61□□□□□ -2.15
WHI3YNL197C YKR070WP36151 352 aaKnown RBP1.61□□□□□ -2.15
WHI3YNL197C YGL204CP53089 101 aa1.61□□□□□ -2.15
WHI3YNL197C SPC2Q04969 178 aa1.61□□□□□ -2.15
WHI3YNL197C RPS1BP23248 255 aaKnown RBP1.6□□□□□ -2.15
WHI3YNL197C FYV5P25585 152 aa1.6□□□□□ -2.15
WHI3YNL197C HPM1P40481 377 aa1.6□□□□□ -2.15
WHI3YNL197C YGL041W-AP0C5N3 154 aa1.59□□□□□ -2.15
WHI3YNL197C ATG8P38182 117 aaRIP-Chip data1.59□□□□□ -2.15not detected
WHI3YNL197C PHB1P40961 287 aa1.59□□□□□ -2.15
WHI3YNL197C YNL019CP53975 284 aa1.59□□□□□ -2.15
WHI3YNL197C TIM8P57744 87 aa1.59□□□□□ -2.15
WHI3YNL197C YOR385WQ08909 290 aa1.59□□□□□ -2.15
WHI3YNL197C YLR361C-AQ3E795 98 aa1.59□□□□□ -2.15
WHI3YNL197C HYM1P32464 399 aa1.59□□□□□ -2.16
WHI3YNL197C GIM4P40005 111 aaKnown RBP1.59□□□□□ -2.16
WHI3YNL197C YPR153WQ06537 140 aa1.59□□□□□ -2.16
WHI3YNL197C ECM31P38122 312 aa1.58□□□□□ -2.16
WHI3YNL197C PRS3P38689 320 aaKnown RBP1.58□□□□□ -2.16
WHI3YNL197C YFL051CP43552 160 aa1.58□□□□□ -2.16
WHI3YNL197C GPI11Q06636 219 aa1.58□□□□□ -2.16
WHI3YNL197C RPS1AP33442 255 aaKnown RBP1.58□□□□□ -2.16
WHI3YNL197C YBR027CP38220 110 aa1.58□□□□□ -2.16
WHI3YNL197C SOM1Q05676 74 aa1.58□□□□□ -2.16
WHI3YNL197C SLH1P53327 1967 aaKnown RBP1.57□□□□□ -2.16
WHI3YNL197C PRE1P22141 198 aaKnown RBP1.57□□□□□ -2.16
WHI3YNL197C POP7P38291 140 aa1.57□□□□□ -2.16
WHI3YNL197C VMA10P48836 114 aaKnown RBP1.57□□□□□ -2.16
WHI3YNL197C DIE2P50076 525 aa1.57□□□□□ -2.16
WHI3YNL197C SUA7P29055 345 aaPredicted RBP1.56□□□□□ -2.16
WHI3YNL197C LSM8P47093 109 aaKnown RBP1.56□□□□□ -2.16
WHI3YNL197C FCY1Q12178 158 aa1.56□□□□□ -2.16
WHI3YNL197C NHP6AP11632 93 aaKnown RBP1.56□□□□□ -2.16
WHI3YNL197C YCR050CP25630 102 aa1.56□□□□□ -2.16
WHI3YNL197C YAL064WP39711 94 aa1.56□□□□□ -2.16
WHI3YNL197C TVP18Q04767 167 aa1.56□□□□□ -2.16
WHI3YNL197C HUT1Q12520 339 aa1.56□□□□□ -2.16
WHI3YNL197C FMP49A0A023PZB3 126 aa1.55□□□□□ -2.16
WHI3YNL197C ELC1Q03071 99 aa1.55□□□□□ -2.16
WHI3YNL197C TMA23Q03525 211 aa1.55□□□□□ -2.16
WHI3YNL197C EMC4P53073 190 aa1.54□□□□□ -2.16
WHI3YNL197C DYN2Q02647 92 aa1.54□□□□□ -2.16
WHI3YNL197C SEN15Q04675 128 aa1.54□□□□□ -2.16
WHI3YNL197C DDP1Q99321 188 aaKnown RBP1.54□□□□□ -2.16
WHI3YNL197C DCV1P43595 202 aa1.54□□□□□ -2.16
WHI3YNL197C LCL2Q08045 131 aa1.54□□□□□ -2.16
WHI3YNL197C ATP14Q12349 124 aa1.54□□□□□ -2.16
WHI3YNL197C RPS20P38701 121 aaKnown RBP1.53□□□□□ -2.16
WHI3YNL197C SPG1P50088 95 aa1.53□□□□□ -2.16
WHI3YNL197C VAM10Q08474 114 aa1.53□□□□□ -2.16
WHI3YNL197C MHF1Q3E835 90 aa1.53□□□□□ -2.16
WHI3YNL197C YGR017WP53210 297 aa1.52□□□□□ -2.17
WHI3YNL197C CCW12Q12127 133 aa1.52□□□□□ -2.17
WHI3YNL197C YNL277W-AQ3E7Z0 62 aa1.52□□□□□ -2.17
WHI3YNL197C HYP2P23301 157 aaKnown RBP1.52□□□□□ -2.17
WHI3YNL197C HUA1P40325 198 aa1.52□□□□□ -2.17
WHI3YNL197C RAD50P12753 1312 aa1.52□□□□□ -2.17
WHI3YNL197C YGL014C-AP0C5N1 53 aa1.51□□□□□ -2.17
WHI3YNL197C CNL1Q06333 122 aa1.51□□□□□ -2.17
WHI3YNL197C RAF1Q06891 181 aa1.51□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 49.1 ms