RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	RPS27B	P38711	82 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	IKI1	P38874	309 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	CYC2	P38909	366 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	RTC4	P53850	401 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	TIM8	P57744	87 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	ARO80	Q04052	950 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	YOR032W-A	Q8TGS1	66 aa		0.39	□□□□□ -2.35
UBX4	YMR067C	YFR010W-A	P0C5N0	62 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	YCR023C	P25351	611 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	MGT1	P26188	188 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	PRS3	P38689	320 aa	Known RBP	0.38	□□□□□ -2.35
UBX4	YMR067C	YEL073C	P39974	107 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	GIM4	P40005	111 aa	Known RBP	0.38	□□□□□ -2.35
UBX4	YMR067C	PDS1	P40316	373 aa	Predicted RBP	0.38	□□□□□ -2.35
UBX4	YMR067C	HOP2	P53187	214 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	RRP17	Q04031	235 aa	Predicted RBP	0.38	□□□□□ -2.35
UBX4	YMR067C	FIT1	Q04433	528 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	LDB18	Q07887	179 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	YLR036C	Q07986	203 aa		0.38	□□□□□ -2.35
UBX4	YMR067C	CDC33	P07260	213 aa	Known RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	MATALPHA2	P0CY08	210 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	HMLALPHA2	P0CY09	210 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	TIR1	P10863	254 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	IDP1	P21954	428 aa	Known RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	TAH1	P25638	111 aa	Predicted RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	ADE1	P27616	306 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	ASF2	P32448	525 aa	Predicted RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	YBL010C	P32788	280 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YEL028W	P39989	153 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YIR020C	P40575	100 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	SBH2	P52871	88 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	TIM13	P53299	105 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	MIX14	Q04341	121 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YMR253C	Q04835	414 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YMR315W	Q04869	349 aa	Known RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	NKP2	Q06162	153 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	SWC7	Q06707	132 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YLR031W	Q07978	186 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	PST2	Q12335	198 aa	Known RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	RTR2	Q12378	196 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	GTT2	Q12390	233 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	OCA6	Q12454	224 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	EFG1	Q3E705	233 aa	Known RBP	0.37	□□□□□ -2.35
UBX4	YMR067C	YGR035W-A	Q45U48	73 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	Q0144	Q9ZZW2	109 aa		0.37	□□□□□ -2.35
UBX4	YMR067C	YSF3	P0C074	85 aa	Predicted RBP	0.36	□□□□□ -2.35
UBX4	YMR067C	STF2	P16965	84 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	SUI1	P32911	108 aa	Known RBP	0.36	□□□□□ -2.35
UBX4	YMR067C	FIG1	P38224	298 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	AIM18	P38884	321 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	RFC4	P40339	323 aa	Known RBP	0.36	□□□□□ -2.35
UBX4	YMR067C	YJR015W	P47090	510 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	RIM9	Q04734	239 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	RAF1	Q06891	181 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	UIP4	Q08926	304 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	YPR202W	Q08993	238 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	YOR015W	Q12169	119 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	ADF1	Q2V2Q1	113 aa		0.36	□□□□□ -2.35
UBX4	YMR067C	YJL197C-A	P0C5P0	93 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	YHR214C-D	P0CX93	97 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.35	□□□□□ -2.35	not detected
UBX4	YMR067C	ETR1	P38071	380 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	SPC25	P40014	221 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	YER121W	P40076	114 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	GCN20	P43535	752 aa	Known RBP	0.35	□□□□□ -2.35
UBX4	YMR067C	APS3	P47064	194 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	LSM3	P57743	89 aa	Known RBP	0.35	□□□□□ -2.35
UBX4	YMR067C	SED1	Q01589	338 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	FMN1	Q03778	218 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	NAT3	Q06504	195 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	YOL014W	Q08110	124 aa		0.35	□□□□□ -2.35
UBX4	YMR067C	RPL35A	P0CX84	120 aa	Known RBP	0.34	□□□□□ -2.36
UBX4	YMR067C	RPL35B	P0CX85	120 aa	Known RBP	0.34	□□□□□ -2.36
UBX4	YMR067C	APA2	P22108	325 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	SEC14	P24280	304 aa	Known RBP	0.34	□□□□□ -2.36
UBX4	YMR067C	RAD51	P25454	400 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	YCR099C	P25657	155 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	AUA1	P32450	94 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	HSP150	P32478	413 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	CLG1	P35190	452 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	VPS51	P36116	164 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	APQ12	P40532	138 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	GAT4	P40569	121 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	GLR1	P41921	483 aa	Known RBP	0.34	□□□□□ -2.36
UBX4	YMR067C	TDA4	P47153	279 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	SIP18	P50263	79 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	YCL048W-A	Q2V2Q2	79 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	YML100W-A	Q8TGT0	57 aa		0.34	□□□□□ -2.36
UBX4	YMR067C	RPL22A	P05749	121 aa	Known RBP	0.33	□□□□□ -2.36
UBX4	YMR067C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.33	□□□□□ -2.36	not detected
UBX4	YMR067C	TRX3	P25372	127 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	SUA7	P29055	345 aa	Predicted RBP	0.33	□□□□□ -2.36
UBX4	YMR067C	FES1	P38260	290 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	MPM1	P40364	252 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	MSS2	P40990	351 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	YFR035C	P43608	114 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	FIP1	P45976	327 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	TMA22	P47089	198 aa	Predicted RBP	0.33	□□□□□ -2.36
UBX4	YMR067C	RPS12	P48589	143 aa	Known RBP	0.33	□□□□□ -2.36
UBX4	YMR067C	SOL1	P50278	321 aa		0.33	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 75.7 ms