RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	RPS31	P05759	152 aa	Known RBP	4.61	□□□□□ -1.67
VPS1	YKR001C	MRS3	P10566	314 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	QRI5	P32344	111 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	ALK2	P32789	676 aa	Predicted RBP	4.61	□□□□□ -1.67
VPS1	YKR001C	YHR140W	P38842	239 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	IRC22	P40006	225 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	NSA2	P40078	261 aa	Known RBP	4.61	□□□□□ -1.67
VPS1	YKR001C	YJL213W	P40896	331 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	TVP15	Q03860	143 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	YMR090W	Q04304	227 aa	Known RBP	4.61	□□□□□ -1.67
VPS1	YKR001C	YPL162C	Q12042	273 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	YCR085W	P25650	117 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	UBP8	P50102	471 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	YGR164W	P53291	111 aa		4.61	□□□□□ -1.67
VPS1	YKR001C	RRS1	Q08746	203 aa	Known RBP	4.61	□□□□□ -1.67
VPS1	YKR001C	YAR066W	P0CX18	203 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	YHR214W	P0CX19	203 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	KRE1	P17260	313 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	MXR2	P25566	168 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	ECM15	P35195	104 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	PAM17	P36147	197 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	YAR029W	P39549	74 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	CPD1	P53314	239 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	ATP23	P53722	227 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	RPS13	P05756	151 aa	Known RBP	4.6	□□□□□ -1.67
VPS1	YKR001C	MDM10	P18409	493 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	YMC1	P32331	307 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	YBL081W	P38180	368 aa	Known RBP	4.6	□□□□□ -1.67
VPS1	YKR001C	YER134C	P40081	178 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	EMC5	P40540	141 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	SHH4	Q06236	168 aa		4.6	□□□□□ -1.67
VPS1	YKR001C	POC4	Q12245	148 aa	Predicted RBP	4.6	□□□□□ -1.67
VPS1	YKR001C	DIF1	O13577	133 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	RPL30	P14120	105 aa	Known RBP	4.59	□□□□□ -1.67
VPS1	YKR001C	YCL042W	P25572	119 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	YKL102C	P34249	101 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	MID2	P36027	376 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	MID1	P41821	548 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	CAX4	P53223	239 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	FHN1	P53279	174 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	SPR6	Q01684	191 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	RAF1	Q06891	181 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	YLR111W	Q12528	110 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	YPR015C	Q12531	247 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	KSH1	Q8TGJ3	72 aa		4.59	□□□□□ -1.67
VPS1	YKR001C	PRO1	P32264	428 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	RPL14A	P36105	138 aa	Known RBP	4.58	□□□□□ -1.68
VPS1	YKR001C	MRP21	P38175	177 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	SDS24	P38314	527 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	YIL029C	P40538	142 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	GPI2	P46961	280 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	ENV10	Q99382	181 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	TAD3	Q9URQ3	322 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	TRP1	P00912	224 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	YBR063C	P38083	404 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	YND1	P40009	630 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	BNS1	P50084	137 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	KNH1	P50112	268 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	ALG9	P53868	555 aa	Known RBP	4.58	□□□□□ -1.68
VPS1	YKR001C	BUD25	P85052	153 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	ADD37	Q03233	198 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	ARR3	Q06598	404 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	STP4	Q07351	490 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	YOL159C	Q08300	171 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	YBR182C-A	Q8TGU6	64 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	ATG40	Q99325	256 aa		4.58	□□□□□ -1.68
VPS1	YKR001C	MAK32	P23060	363 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	YGL010W	P25338	174 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	AHP1	P38013	176 aa	Known RBP	4.57	□□□□□ -1.68
VPS1	YKR001C	RIM2	P38127	377 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	MBB1	P39534	108 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	EST3	Q03096	181 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	YPR064W	Q12492	139 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	YIL102C-A	Q2V2P5	75 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	YLR363W-A	Q3E747	85 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	PAU16	P35994	123 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	PAU5	P43575	122 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	AIM25	P47140	327 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	MPC1	P53157	130 aa	Known RBP	4.57	□□□□□ -1.68
VPS1	YKR001C	YPR098C	Q06089	161 aa		4.57	□□□□□ -1.68
VPS1	YKR001C	YCR099C	P25657	155 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	CDC5	P32562	705 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	ARC40	P38328	384 aa	Known RBP	4.56	□□□□□ -1.68
VPS1	YKR001C	PHO89	P38361	574 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	HNT2	P49775	206 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	TOS8	P53147	276 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	PET191	Q02772	108 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	RFM1	Q12192	310 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	RNH203	Q12338	110 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	YDR119W-A	Q2V2P9	66 aa		4.56	□□□□□ -1.68
VPS1	YKR001C	AQY1	P0CD91	305 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	TFS1	P14306	219 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	YCR050C	P25630	102 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	CSH1	P38287	376 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	SAP30	P38429	201 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	INM1	P38710	295 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	GPI19	Q04082	140 aa		4.55	□□□□□ -1.68
VPS1	YKR001C	SME1	Q12330	94 aa	Predicted RBP	4.55	□□□□□ -1.68
VPS1	YKR001C	SEC16	P48415	2195 aa	Known RBP	4.55	□□□□□ -1.68
VPS1	YKR001C	YBR144C	P34215	104 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 52.7 ms