RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	MAK3	Q03503	176 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	VAM10	Q08474	114 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.75	□□□□□ -2.29
RSM28	YDR494W	PET54	P10834	293 aa		0.75	□□□□□ -2.29
RSM28	YDR494W	SPT14	P32363	452 aa		0.75	□□□□□ -2.29
RSM28	YDR494W	YPT31	P38555	223 aa	Known RBP	0.75	□□□□□ -2.29
RSM28	YDR494W	HTD2	P38790	280 aa	Known RBP	0.75	□□□□□ -2.29
RSM28	YDR494W	IPI1	P38803	334 aa	Predicted RBP	0.75	□□□□□ -2.29
RSM28	YDR494W	MOG1	P47123	218 aa		0.75	□□□□□ -2.29
RSM28	YDR494W	YNR064C	P53750	290 aa		0.75	□□□□□ -2.29
RSM28	YDR494W	YMR320W	Q04897	101 aa		0.75	□□□□□ -2.29
RSM28	YDR494W	PHO13	P19881	312 aa		0.74	□□□□□ -2.29
RSM28	YDR494W	MRPL24	P36525	258 aa	Predicted RBP	0.74	□□□□□ -2.29
RSM28	YDR494W	YDR476C	Q03362	224 aa		0.74	□□□□□ -2.29
RSM28	YDR494W	YOR1	P53049	1477 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	ADE6	P38972	1358 aa	Known RBP	0.73	□□□□□ -2.29
RSM28	YDR494W	PBI2	P0CT04	75 aa	Known RBP	0.73	□□□□□ -2.29
RSM28	YDR494W	DDR48	P18899	430 aa	Known RBP	0.73	□□□□□ -2.29
RSM28	YDR494W	YBR027C	P38220	110 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	TRS20	P38334	175 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	YEL014C	P39999	101 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	LSM1	P47017	172 aa	Known RBP	0.73	□□□□□ -2.29
RSM28	YDR494W	YGL193C	P53097	103 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	CMC4	Q3E7A9	73 aa		0.73	□□□□□ -2.29
RSM28	YDR494W	SRP21	P32342	167 aa		0.72	□□□□□ -2.29
RSM28	YDR494W	ACP1	P32463	125 aa		0.72	□□□□□ -2.29
RSM28	YDR494W	GLC8	P41818	229 aa		0.72	□□□□□ -2.29
RSM28	YDR494W	PKR1	Q03880	122 aa	Known RBP	0.72	□□□□□ -2.29
RSM28	YDR494W	SPA2	P23201	1466 aa	Known RBP	0.72	□□□□□ -2.29
RSM28	YDR494W	HSP150	P32478	413 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	YGR201C	P42936	225 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	EST3	Q03096	181 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	YPD1	Q07688	167 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	IRC19	Q07843	230 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	RFU1	Q08003	200 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	YHR213W-B	Q8TGK1	99 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	RIB3	Q99258	208 aa		0.71	□□□□□ -2.3
RSM28	YDR494W	HSP12	P22943	109 aa	Known RBP	0.7	□□□□□ -2.3
RSM28	YDR494W	ECM31	P38122	312 aa		0.7	□□□□□ -2.3
RSM28	YDR494W	RCF2	P53721	224 aa		0.7	□□□□□ -2.3
RSM28	YDR494W	YNL122C	P53921	115 aa	Predicted RBP	0.7	□□□□□ -2.3
RSM28	YDR494W	RAV2	Q03956	351 aa		0.7	□□□□□ -2.3
RSM28	YDR494W	SCS22	Q6Q595	175 aa		0.7	□□□□□ -2.3
RSM28	YDR494W	COX5B	P00425	151 aa		0.69	□□□□□ -2.3
RSM28	YDR494W	HHY1	P39982	102 aa		0.69	□□□□□ -2.3
RSM28	YDR494W	RBL2	P48606	106 aa	Known RBP	0.69	□□□□□ -2.3
RSM28	YDR494W	COF1	Q03048	143 aa	Known RBP	0.69	□□□□□ -2.3
RSM28	YDR494W	FMN1	Q03778	218 aa		0.69	□□□□□ -2.3
RSM28	YDR494W	NMA1	Q06178	401 aa	Known RBP	0.69	□□□□□ -2.3
RSM28	YDR494W	YHR140W	P38842	239 aa		0.68	□□□□□ -2.3
RSM28	YDR494W	CYC2	P38909	366 aa		0.68	□□□□□ -2.3
RSM28	YDR494W	IPT1	P38954	527 aa		0.68	□□□□□ -2.3
RSM28	YDR494W	GPI2	P46961	280 aa		0.68	□□□□□ -2.3
RSM28	YDR494W	YCL001W-A	P87012	153 aa		0.68	□□□□□ -2.3
RSM28	YDR494W	YGL041W-A	P0C5N3	154 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	HYP2	P23301	157 aa	Known RBP	0.67	□□□□□ -2.3
RSM28	YDR494W	FYV5	P25585	152 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	SUI1	P32911	108 aa	Known RBP	0.67	□□□□□ -2.3
RSM28	YDR494W	RPL14A	P36105	138 aa	Known RBP	0.67	□□□□□ -2.3
RSM28	YDR494W	ATG8	P38182	117 aa	RIP-Chip data	0.67	□□□□□ -2.3	not detected
RSM28	YDR494W	YAP3	P38749	330 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	RPL14B	P38754	138 aa	Known RBP	0.67	□□□□□ -2.3
RSM28	YDR494W	YDR366C	P87287	132 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	CSN9	Q03981	162 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	RRT7	Q07829	113 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	YOR072W	Q08486	104 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	SPC3	Q12133	184 aa		0.67	□□□□□ -2.3
RSM28	YDR494W	UBR1	P19812	1950 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	PRP8	P33334	2413 aa	Known RBP	0.66	□□□□□ -2.3
RSM28	YDR494W	RPS1B	P23248	255 aa	Known RBP	0.66	□□□□□ -2.3
RSM28	YDR494W	HYM1	P32464	399 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	HPM1	P40481	377 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	DIE2	P50076	525 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	TIM8	P57744	87 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	YPR153W	Q06537	140 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	YOR385W	Q08909	290 aa		0.66	□□□□□ -2.3
RSM28	YDR494W	ROM2	P51862	1356 aa	Known RBP	0.66	□□□□□ -2.3
RSM28	YDR494W	HAP2	P06774	265 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	RPS1A	P33442	255 aa	Known RBP	0.65	□□□□□ -2.31
RSM28	YDR494W	YAL064W	P39711	94 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	PHB1	P40961	287 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	YGR039W	P53225	103 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	HHO1	P53551	258 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	ATP19	P81451	68 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	MGR2	Q02889	113 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	SEN15	Q04675	128 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	SOM1	Q05676	74 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	GPI11	Q06636	219 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	YLR361C-A	Q3E795	98 aa		0.65	□□□□□ -2.31
RSM28	YDR494W	NHP6A	P11632	93 aa	Known RBP	0.64	□□□□□ -2.31
RSM28	YDR494W	YCR050C	P25630	102 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	RPC19	P28000	142 aa	Known RBP	0.64	□□□□□ -2.31
RSM28	YDR494W	PRS3	P38689	320 aa	Known RBP	0.64	□□□□□ -2.31
RSM28	YDR494W	YGL204C	P53089	101 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	YGR042W	P53227	271 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	YNL019C	P53975	284 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	TVP18	Q04767	167 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	SPC2	Q04969	178 aa		0.64	□□□□□ -2.31
RSM28	YDR494W	RPS22A	P0C0W1	130 aa	Known RBP	0.63	□□□□□ -2.31
RSM28	YDR494W	YGL014C-A	P0C5N1	53 aa		0.63	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms