RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	POR2	P40478	281 aa		-2	□□□□□ -2.73
VAR1	Q0140	KTI11	Q3E840	82 aa		-2.01	□□□□□ -2.73
VAR1	Q0140	NVJ1	P38881	321 aa		-2.02	□□□□□ -2.73
VAR1	Q0140	RCF2	P53721	224 aa		-2.02	□□□□□ -2.73
VAR1	Q0140	MHF1	Q3E835	90 aa		-2.02	□□□□□ -2.73
VAR1	Q0140	YKR041W	P36134	250 aa		-2.03	□□□□□ -2.73
VAR1	Q0140	YDR102C	Q03864	110 aa		-2.03	□□□□□ -2.73
VAR1	Q0140	YBR013C	P38215	129 aa		-2.04	□□□□□ -2.74
VAR1	Q0140	FIP1	P45976	327 aa		-2.04	□□□□□ -2.74
VAR1	Q0140	SPA2	P23201	1466 aa	Known RBP	-2.05	□□□□□ -2.74
VAR1	Q0140	RME1	P32338	300 aa	Known RBP	-2.05	□□□□□ -2.74
VAR1	Q0140	YLR194C	Q05777	254 aa		-2.05	□□□□□ -2.74
VAR1	Q0140	COA4	Q05809	96 aa		-2.05	□□□□□ -2.74
VAR1	Q0140	IRC19	Q07843	230 aa		-2.05	□□□□□ -2.74
VAR1	Q0140	RFU1	Q08003	200 aa		-2.05	□□□□□ -2.74
VAR1	Q0140	FES1	P38260	290 aa		-2.06	□□□□□ -2.74
VAR1	Q0140	MIC27	P50945	234 aa		-2.06	□□□□□ -2.74
VAR1	Q0140	YPR153W	Q06537	140 aa		-2.06	□□□□□ -2.74
VAR1	Q0140	YOL164W-A	Q3E7A5	60 aa		-2.06	□□□□□ -2.74
VAR1	Q0140	NHP6A	P11632	93 aa	Known RBP	-2.07	□□□□□ -2.74
VAR1	Q0140	LST8	P41318	303 aa		-2.07	□□□□□ -2.74
VAR1	Q0140	YDR010C	Q12426	110 aa		-2.09	□□□□□ -2.74
VAR1	Q0140	SAC3	P46674	1301 aa		-2.1	□□□□□ -2.75
VAR1	Q0140	SHG1	P38337	142 aa		-2.1	□□□□□ -2.75
VAR1	Q0140	RDI1	Q12434	202 aa		-2.1	□□□□□ -2.75
VAR1	Q0140	POL2	P21951	2222 aa	Known RBP	-2.1	□□□□□ -2.75
VAR1	Q0140	MRS4	P23500	304 aa		-2.11	□□□□□ -2.75
VAR1	Q0140	YFR035C	P43608	114 aa		-2.11	□□□□□ -2.75
VAR1	Q0140	YJR128W	P47162	119 aa		-2.11	□□□□□ -2.75
VAR1	Q0140	THI74	Q04083	370 aa		-2.11	□□□□□ -2.75
VAR1	Q0140	BRR2	P32639	2163 aa	Known RBP	-2.11	□□□□□ -2.75
VAR1	Q0140	FUN14	P18411	198 aa		-2.12	□□□□□ -2.75
VAR1	Q0140	JAC1	P53193	184 aa		-2.12	□□□□□ -2.75
VAR1	Q0140	SRP21	P32342	167 aa		-2.13	□□□□□ -2.75
VAR1	Q0140	YNL019C	P53975	284 aa		-2.13	□□□□□ -2.75
VAR1	Q0140	GPI2	P46961	280 aa		-2.15	□□□□□ -2.75
VAR1	Q0140	SNO1	Q03144	224 aa		-2.15	□□□□□ -2.75
VAR1	Q0140	TY4B-J	P47024	1803 aa		-2.16	□□□□□ -2.76
VAR1	Q0140	RAD51	P25454	400 aa		-2.16	□□□□□ -2.76
VAR1	Q0140	SRP14	P38985	146 aa		-2.16	□□□□□ -2.76
VAR1	Q0140	MRPL31	P14063	131 aa	Predicted RBP	-2.18	□□□□□ -2.76
VAR1	Q0140	VMA10	P48836	114 aa	Known RBP	-2.18	□□□□□ -2.76
VAR1	Q0140	SEC16	P48415	2195 aa	Known RBP	-2.19	□□□□□ -2.76
VAR1	Q0140	PEX11	Q12462	236 aa		-2.19	□□□□□ -2.76
VAR1	Q0140	NMT1	P14743	455 aa		-2.2	□□□□□ -2.76
VAR1	Q0140	RPB4	P20433	221 aa	Predicted RBP	-2.2	□□□□□ -2.76
VAR1	Q0140	HUT1	Q12520	339 aa		-2.2	□□□□□ -2.76
VAR1	Q0140	YGL101W	P53144	215 aa		-2.21	□□□□□ -2.76
VAR1	Q0140	YHR213W	P0CI67	198 aa		-2.22	□□□□□ -2.76
VAR1	Q0140	PLP1	Q04004	230 aa		-2.22	□□□□□ -2.76
VAR1	Q0140	TY1B-H	O13535	1793 aa		-2.23	□□□□□ -2.77
VAR1	Q0140	UBR1	P19812	1950 aa		-2.23	□□□□□ -2.77
VAR1	Q0140	AIM4	P38305	123 aa	Predicted RBP	-2.23	□□□□□ -2.77
VAR1	Q0140	ATP5	P09457	212 aa		-2.24	□□□□□ -2.77
VAR1	Q0140	ATP19	P81451	68 aa		-2.24	□□□□□ -2.77
VAR1	Q0140	YLR046C	Q12253	270 aa		-2.24	□□□□□ -2.77
VAR1	Q0140	YRF1-3	P0CX14	1859 aa		-2.24	□□□□□ -2.77
VAR1	Q0140	YRF1-7	P0CX15	1859 aa		-2.24	□□□□□ -2.77
VAR1	Q0140	YEA6	P39953	335 aa		-2.25	□□□□□ -2.77
VAR1	Q0140	YET3	Q07451	203 aa		-2.25	□□□□□ -2.77
VAR1	Q0140	ANB1	P19211	157 aa		-2.26	□□□□□ -2.77
VAR1	Q0140	JIP3	O13555	125 aa		-2.27	□□□□□ -2.77
VAR1	Q0140	YSF3	P0C074	85 aa	Predicted RBP	-2.28	□□□□□ -2.77
VAR1	Q0140	RPL40A	P0CH08	128 aa	Known RBP	-2.28	□□□□□ -2.77
VAR1	Q0140	RPL40B	P0CH09	128 aa	Known RBP	-2.28	□□□□□ -2.77
VAR1	Q0140	UTP11	P34247	250 aa	Predicted RBP	-2.28	□□□□□ -2.77
VAR1	Q0140	COX5B	P00425	151 aa		-2.29	□□□□□ -2.78
VAR1	Q0140	YNL140C	P53910	189 aa		-2.29	□□□□□ -2.78
VAR1	Q0140	ARL3	Q02804	198 aa		-2.29	□□□□□ -2.78
VAR1	Q0140	SRX1	P36077	127 aa		-2.31	□□□□□ -2.78
VAR1	Q0140	SCS22	Q6Q595	175 aa		-2.31	□□□□□ -2.78
VAR1	Q0140	HSK3	P69852	69 aa		-2.32	□□□□□ -2.78
VAR1	Q0140	YKT6	P36015	200 aa	Known RBP	-2.33	□□□□□ -2.78
VAR1	Q0140	EMP24	P32803	203 aa	Known RBP	-2.34	□□□□□ -2.78
VAR1	Q0140	MRPL11	P36521	249 aa	Predicted RBP	-2.34	□□□□□ -2.78
VAR1	Q0140	PFY1	P07274	126 aa		-2.35	□□□□□ -2.79
VAR1	Q0140	BUB2	P26448	306 aa	Predicted RBP	-2.35	□□□□□ -2.79
VAR1	Q0140	MED11	Q99278	115 aa		-2.35	□□□□□ -2.79
VAR1	Q0140	TRR1	P29509	319 aa	Known RBP	-2.36	□□□□□ -2.79
VAR1	Q0140	YGL193C	P53097	103 aa		-2.36	□□□□□ -2.79
VAR1	Q0140	YCL001W-A	P87012	153 aa		-2.36	□□□□□ -2.79
VAR1	Q0140	RRT7	Q07829	113 aa		-2.36	□□□□□ -2.79
VAR1	Q0140	YNL190W	P53872	204 aa		-2.37	□□□□□ -2.79
VAR1	Q0140	TMA20	P89886	181 aa	Predicted RBP	-2.37	□□□□□ -2.79
VAR1	Q0140	CGR1	P53188	120 aa		-2.38	□□□□□ -2.79
VAR1	Q0140	YLR050C	Q12155	161 aa	Known RBP	-2.38	□□□□□ -2.79
VAR1	Q0140	CMD1	P06787	147 aa	Known RBP	-2.39	□□□□□ -2.79
VAR1	Q0140	FYV5	P25585	152 aa		-2.39	□□□□□ -2.79
VAR1	Q0140	YER121W	P40076	114 aa		-2.39	□□□□□ -2.79
VAR1	Q0140	ORM1	P53224	222 aa		-2.39	□□□□□ -2.79
VAR1	Q0140	COF1	Q03048	143 aa	Known RBP	-2.39	□□□□□ -2.79
VAR1	Q0140	APA2	P22108	325 aa		-2.4	□□□□□ -2.79
VAR1	Q0140	VPS55	P47111	140 aa		-2.44	□□□□□ -2.8
VAR1	Q0140	YPL067C	Q02754	198 aa		-2.44	□□□□□ -2.8
VAR1	Q0140	SFT2	P38166	215 aa		-2.46	□□□□□ -2.8
VAR1	Q0140	DLS1	P40366	167 aa		-2.46	□□□□□ -2.8
VAR1	Q0140	LSM3	P57743	89 aa	Known RBP	-2.46	□□□□□ -2.8
VAR1	Q0140	LCL1	Q02786	101 aa		-2.46	□□□□□ -2.8
VAR1	Q0140	NAT5	Q08689	176 aa		-2.46	□□□□□ -2.8
VAR1	Q0140	RPS1B	P23248	255 aa	Known RBP	-2.47	□□□□□ -2.8

Retrieved 100 of 5,963 RNA–protein pairs in 168.3 ms