RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	FCY2	P17064	533 aa		3.11	□□□□□ -1.91
USA1	YML029W	UTR5	P32630	166 aa		3.11	□□□□□ -1.91
USA1	YML029W	ICS2	P38284	255 aa		3.11	□□□□□ -1.91
USA1	YML029W	SPC25	P40014	221 aa		3.11	□□□□□ -1.91
USA1	YML029W	LST8	P41318	303 aa		3.11	□□□□□ -1.91
USA1	YML029W	YNL234W	P53857	426 aa		3.11	□□□□□ -1.91
USA1	YML029W	FMP41	P53889	259 aa	Known RBP	3.11	□□□□□ -1.91
USA1	YML029W	FYV6	P53913	173 aa		3.11	□□□□□ -1.91
USA1	YML029W	DYN2	Q02647	92 aa		3.11	□□□□□ -1.91
USA1	YML029W	RUB1	Q03919	77 aa		3.11	□□□□□ -1.91
USA1	YML029W	SDH7	Q04401	133 aa		3.11	□□□□□ -1.91
USA1	YML029W	HOR7	Q05827	59 aa		3.11	□□□□□ -1.91
USA1	YML029W	ECM25	P32525	599 aa		3.11	□□□□□ -1.91
USA1	YML029W	YBL071C	P38185	102 aa		3.11	□□□□□ -1.91
USA1	YML029W	WSS1	P38838	269 aa		3.11	□□□□□ -1.91
USA1	YML029W	YGR269W	P40326	108 aa		3.11	□□□□□ -1.91
USA1	YML029W	YGR151C	P53287	111 aa		3.11	□□□□□ -1.91
USA1	YML029W	BOR1	P53838	576 aa		3.11	□□□□□ -1.91
USA1	YML029W	ADD37	Q03233	198 aa		3.11	□□□□□ -1.91
USA1	YML029W	USV1	Q12132	391 aa		3.11	□□□□□ -1.91
USA1	YML029W	COX19	Q3E731	98 aa		3.11	□□□□□ -1.91
USA1	YML029W	RPS25B	P0C0T4	108 aa	Known RBP	3.1	□□□□□ -1.91
USA1	YML029W	YER190C-B	P0CX94	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YEL077W-A	P0CX95	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YGR296C-B	P0CX96	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YPL283W-B	P0CX97	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YPR204C-A	P0CX98	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YFL068W	P0CX99	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YLL066W-A	P0CY00	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	YLL067W-A	P0CY01	160 aa		3.1	□□□□□ -1.91
USA1	YML029W	QCR9	P22289	66 aa		3.1	□□□□□ -1.91
USA1	YML029W	AHT1	P29589	182 aa		3.1	□□□□□ -1.91
USA1	YML029W	MSK1	P32048	576 aa		3.1	□□□□□ -1.91
USA1	YML029W	VPS55	P47111	140 aa		3.1	□□□□□ -1.91
USA1	YML029W	CAB4	P53332	305 aa		3.1	□□□□□ -1.91
USA1	YML029W	DUG3	P53871	357 aa		3.1	□□□□□ -1.91
USA1	YML029W	TMA23	Q03525	211 aa		3.1	□□□□□ -1.91
USA1	YML029W	YOR015W	Q12169	119 aa		3.1	□□□□□ -1.91
USA1	YML029W	FCY1	Q12178	158 aa		3.1	□□□□□ -1.91
USA1	YML029W	POC4	Q12245	148 aa	Predicted RBP	3.1	□□□□□ -1.91
USA1	YML029W	JID1	Q12350	301 aa		3.1	□□□□□ -1.91
USA1	YML029W	RPS25A	Q3E792	108 aa	Predicted RBP	3.1	□□□□□ -1.91
USA1	YML029W	VMA9	Q3E7B6	73 aa		3.1	□□□□□ -1.91
USA1	YML029W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
USA1	YML029W	LDS1	P31379	325 aa		3.1	□□□□□ -1.91
USA1	YML029W	SRB6	P32570	121 aa		3.1	□□□□□ -1.91
USA1	YML029W	YKR045C	P36138	183 aa		3.1	□□□□□ -1.91
USA1	YML029W	FLO5	P38894	1075 aa		3.1	□□□□□ -1.91
USA1	YML029W	SMD3	P43321	101 aa	Known RBP	3.1	□□□□□ -1.91
USA1	YML029W	MRS3	P10566	314 aa		3.09	□□□□□ -1.91
USA1	YML029W	ELO2	P25358	347 aa		3.09	□□□□□ -1.91
USA1	YML029W	MRPL38	P35996	138 aa	Predicted RBP	3.09	□□□□□ -1.91
USA1	YML029W	RRT1	P38192	103 aa		3.09	□□□□□ -1.91
USA1	YML029W	CSH1	P38287	376 aa		3.09	□□□□□ -1.91
USA1	YML029W	PTC7	P38797	343 aa		3.09	□□□□□ -1.91
USA1	YML029W	BDH1	P39714	382 aa		3.09	□□□□□ -1.91
USA1	YML029W	YPI1	P43587	155 aa		3.09	□□□□□ -1.91
USA1	YML029W	MCM22	P47167	239 aa		3.09	□□□□□ -1.91
USA1	YML029W	SOD1	P00445	154 aa	Known RBP	3.09	□□□□□ -1.92
USA1	YML029W	SPO13	P23624	291 aa		3.09	□□□□□ -1.92
USA1	YML029W	CDC50	P25656	391 aa		3.09	□□□□□ -1.92
USA1	YML029W	YBL059W	P34224	193 aa		3.09	□□□□□ -1.92
USA1	YML029W	YDL186W	P48568	277 aa		3.09	□□□□□ -1.92
USA1	YML029W	MCH1	Q07376	486 aa		3.09	□□□□□ -1.92
USA1	YML029W	QDR3	P38227	689 aa		3.08	□□□□□ -1.92
USA1	YML029W	YJR015W	P47090	510 aa		3.08	□□□□□ -1.92
USA1	YML029W	RIB4	P50861	169 aa	Predicted RBP	3.08	□□□□□ -1.92
USA1	YML029W	MIC27	P50945	234 aa		3.08	□□□□□ -1.92
USA1	YML029W	DIA1	P54005	336 aa		3.08	□□□□□ -1.92
USA1	YML029W	MSA1	Q08471	629 aa		3.08	□□□□□ -1.92
USA1	YML029W	POP5	P28005	173 aa		3.08	□□□□□ -1.92
USA1	YML029W	RIB5	P38145	238 aa		3.08	□□□□□ -1.92
USA1	YML029W	YPT31	P38555	223 aa	Known RBP	3.08	□□□□□ -1.92
USA1	YML029W	YIL024C	P40543	189 aa		3.08	□□□□□ -1.92
USA1	YML029W	YMR007W	Q03675	126 aa		3.08	□□□□□ -1.92
USA1	YML029W	AVO2	Q04749	426 aa		3.08	□□□□□ -1.92
USA1	YML029W	DXO1	Q06349	442 aa		3.08	□□□□□ -1.92
USA1	YML029W	POS5	Q06892	414 aa		3.08	□□□□□ -1.92
USA1	YML029W	LDS2	Q08218	356 aa		3.08	□□□□□ -1.92
USA1	YML029W	CYC3	P06182	269 aa		3.07	□□□□□ -1.92
USA1	YML029W	ALK2	P32789	676 aa	Predicted RBP	3.07	□□□□□ -1.92
USA1	YML029W	YBR144C	P34215	104 aa		3.07	□□□□□ -1.92
USA1	YML029W	YER085C	P40058	173 aa		3.07	□□□□□ -1.92
USA1	YML029W	POR2	P40478	281 aa		3.07	□□□□□ -1.92
USA1	YML029W	COX16	P47081	118 aa		3.07	□□□□□ -1.92
USA1	YML029W	SWT21	P53873	357 aa	Predicted RBP	3.07	□□□□□ -1.92
USA1	YML029W	YHP1	Q04116	353 aa		3.07	□□□□□ -1.92
USA1	YML029W	SHH3	Q04487	196 aa		3.07	□□□□□ -1.92
USA1	YML029W	CTR3	Q06686	241 aa		3.07	□□□□□ -1.92
USA1	YML029W	TIM18	Q08749	192 aa		3.07	□□□□□ -1.92
USA1	YML029W	ERG27	Q12452	347 aa	Known RBP	3.07	□□□□□ -1.92
USA1	YML029W	PIS1	P06197	220 aa	Known RBP	3.07	□□□□□ -1.92
USA1	YML029W	CNB1	P25296	175 aa		3.07	□□□□□ -1.92
USA1	YML029W	RPL14A	P36105	138 aa	Known RBP	3.07	□□□□□ -1.92
USA1	YML029W	RPL14B	P38754	138 aa	Known RBP	3.07	□□□□□ -1.92
USA1	YML029W	SNF11	P38956	169 aa		3.07	□□□□□ -1.92
USA1	YML029W	YGR018C	P53211	109 aa		3.07	□□□□□ -1.92
USA1	YML029W	PAU4	P53427	120 aa		3.07	□□□□□ -1.92
USA1	YML029W	YPL162C	Q12042	273 aa		3.07	□□□□□ -1.92
USA1	YML029W	SME1	Q12330	94 aa	Predicted RBP	3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms