RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	YLR302C	O13544	120 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	RPP2A	P05319	106 aa	Known RBP	10.43	□□□□□ -0.74
BDF1	YLR399C	YJR015W	P47090	510 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	RIM9	Q04734	239 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	Q0144	Q9ZZW2	109 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	COX1	P00401	534 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	HMRA1	P0CY11	126 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	NNK1	P36003	928 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	UBS1	P38290	277 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	SEC72	P39742	193 aa	Known RBP	10.42	□□□□□ -0.74
BDF1	YLR399C	CCS1	P40202	249 aa	Known RBP	10.42	□□□□□ -0.74
BDF1	YLR399C	BLM10	P43583	2143 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	ARP3	P47117	449 aa	Known RBP	10.42	□□□□□ -0.74
BDF1	YLR399C	DIA1	P54005	336 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	SCW10	Q04951	389 aa		10.42	□□□□□ -0.74
BDF1	YLR399C	SAG1	P20840	650 aa		10.41	□□□□□ -0.74
BDF1	YLR399C	RAD23	P32628	398 aa	Known RBP	10.41	□□□□□ -0.74
BDF1	YLR399C	SHO1	P40073	367 aa		10.41	□□□□□ -0.74
BDF1	YLR399C	PRM5	P40476	318 aa		10.41	□□□□□ -0.74
BDF1	YLR399C	SAS2	P40963	338 aa		10.41	□□□□□ -0.74
BDF1	YLR399C	SDS23	P53172	527 aa		10.41	□□□□□ -0.74
BDF1	YLR399C	ADH1	P00330	348 aa	Known RBP	10.4	□□□□□ -0.74
BDF1	YLR399C	YNR064C	P53750	290 aa		10.4	□□□□□ -0.74
BDF1	YLR399C	SWT21	P53873	357 aa	Predicted RBP	10.4	□□□□□ -0.74
BDF1	YLR399C	URK1	P27515	501 aa		10.4	□□□□□ -0.75
BDF1	YLR399C	RML2	P32611	393 aa		10.4	□□□□□ -0.75
BDF1	YLR399C	MCH2	P36032	473 aa		10.4	□□□□□ -0.75
BDF1	YLR399C	ECM33	P38248	429 aa	Known RBP	10.4	□□□□□ -0.75
BDF1	YLR399C	BOR1	P53838	576 aa		10.4	□□□□□ -0.75
BDF1	YLR399C	ECM18	Q04623	453 aa		10.4	□□□□□ -0.75
BDF1	YLR399C	RPL7B	Q12213	244 aa	Known RBP	10.4	□□□□□ -0.75
BDF1	YLR399C	YPS6	P40583	537 aa		10.39	□□□□□ -0.75
BDF1	YLR399C	YMR316C-A	I2HB70	103 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	YER079W	P40052	210 aa	Known RBP	10.38	□□□□□ -0.75
BDF1	YLR399C	OYE3	P41816	400 aa	Predicted RBP	10.38	□□□□□ -0.75
BDF1	YLR399C	POP3	P53833	195 aa	Predicted RBP	10.38	□□□□□ -0.75
BDF1	YLR399C	USB1	Q12208	290 aa	Known RBP	10.38	□□□□□ -0.75
BDF1	YLR399C	TIR1	P10863	254 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	DAL82	P21705	255 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	SRX1	P36077	127 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	BRP1	P53194	125 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	YNL184C	P53876	108 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	DYN2	Q02647	92 aa		10.38	□□□□□ -0.75
BDF1	YLR399C	CYR1	P08678	2026 aa	Known RBP	10.38	□□□□□ -0.75
BDF1	YLR399C	HYP2	P23301	157 aa	Known RBP	10.37	□□□□□ -0.75
BDF1	YLR399C	NTC20	P38302	140 aa	Predicted RBP	10.37	□□□□□ -0.75
BDF1	YLR399C	MIC27	P50945	234 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	COX18	P53239	316 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	ATG4	P53867	494 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	VPS71	Q03433	280 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	DPP1	Q05521	289 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	UTP23	Q12339	254 aa	Known RBP	10.37	□□□□□ -0.75
BDF1	YLR399C	WIP1	Q2V2P8	89 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	MRS3	P10566	314 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	NUD1	P32336	851 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	MOB1	P40484	314 aa		10.37	□□□□□ -0.75
BDF1	YLR399C	NIP7	Q08962	181 aa	Known RBP	10.37	□□□□□ -0.75
BDF1	YLR399C	MPD1	Q12404	318 aa	Known RBP	10.37	□□□□□ -0.75
BDF1	YLR399C	YFL054C	P43549	646 aa		10.36	□□□□□ -0.75
BDF1	YLR399C	YAR1	P46683	200 aa		10.36	□□□□□ -0.75
BDF1	YLR399C	YML079W	Q03629	201 aa		10.36	□□□□□ -0.75
BDF1	YLR399C	SEC16	P48415	2195 aa	Known RBP	10.36	□□□□□ -0.75
BDF1	YLR399C	MRS1	P07266	363 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	RPL23A	P0CX41	137 aa	Known RBP	10.35	□□□□□ -0.75
BDF1	YLR399C	RPL23B	P0CX42	137 aa	Known RBP	10.35	□□□□□ -0.75
BDF1	YLR399C	YFL068W	P0CX99	160 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	YLL066W-A	P0CY00	160 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	YLL067W-A	P0CY01	160 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	SNU13	P39990	126 aa	Known RBP	10.35	□□□□□ -0.75
BDF1	YLR399C	HUA1	P40325	198 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	NCE102	Q12207	173 aa	RIP-Chip data	10.35	□□□□□ -0.75	not detected
BDF1	YLR399C	YIL102C-A	Q2V2P5	75 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	BRR2	P32639	2163 aa	Known RBP	10.35	□□□□□ -0.75
BDF1	YLR399C	CDC43	P18898	376 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	YDL129W	Q07555	291 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	THI72	Q08579	599 aa		10.35	□□□□□ -0.75
BDF1	YLR399C	TRS23	Q03784	219 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	YOS1	Q3E834	85 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	IMP1	P28627	190 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	SOR1	P35497	357 aa	Known RBP	10.34	□□□□□ -0.75
BDF1	YLR399C	BET5	Q03630	159 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	YMR254C	Q04838	102 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	SOR2	Q07786	357 aa		10.34	□□□□□ -0.75
BDF1	YLR399C	ACC1	Q00955	2233 aa	Known RBP	10.33	□□□□□ -0.76
BDF1	YLR399C	POL2	P21951	2222 aa	Known RBP	10.33	□□□□□ -0.76
BDF1	YLR399C	YAR068W	P39564	161 aa		10.33	□□□□□ -0.76
BDF1	YLR399C	CRZ1	P53968	678 aa		10.33	□□□□□ -0.76
BDF1	YLR399C	API2	Q04413	109 aa		10.33	□□□□□ -0.76
BDF1	YLR399C	RPS16A	P0CX51	143 aa	Known RBP	10.32	□□□□□ -0.76
BDF1	YLR399C	RPS16B	P0CX52	143 aa	Known RBP	10.32	□□□□□ -0.76
BDF1	YLR399C	YIL012W	P40551	113 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	NUP42	P49686	430 aa	Known RBP	10.32	□□□□□ -0.76
BDF1	YLR399C	YHP1	Q04116	353 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	YPR098C	Q06089	161 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	HNT3	Q08702	217 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	BOL1	Q3E793	110 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	RAV2	Q03956	351 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	YDR391C	Q04170	232 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	YDR215C	Q12240	137 aa		10.32	□□□□□ -0.76
BDF1	YLR399C	RPL12A	P0CX53	165 aa	Known RBP	10.31	□□□□□ -0.76

Retrieved 100 of 5,963 RNA–protein pairs in 74.3 ms