RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 RXFP1Q9HBX9 757 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 SIX2Q9NPC8 291 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 CISHQ9NSE2 258 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 LMCD1Q9NZU5 365 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 FNIP2Q9P278 1114 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 HMGXB4Q9UGU5 601 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 DNAJC12Q9UKB3 198 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 SIK3Q9Y2K2 1263 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 PCDHB4Q9Y5E5 795 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 BACE2Q9Y5Z0 518 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 IRAK3Q9Y616 596 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 MTCH2Q9Y6C9 303 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 SPDYE4A6NLX3 237 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 GABRDO14764 452 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 LILRB3O75022 631 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 FAM163BP0C2L3 166 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 LMO2P25791 158 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 USP8P40818 1118 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 GCNT1Q02742 428 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 SLC39A12Q504Y0 691 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 KLHDC7AQ5VTJ3 777 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 LLGL2Q6P1M3 1020 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 RSPO2Q6UXX9 243 aaPredicted RBP15.97■□□□□ 0.15
NUP54-213ENST00000513352 DCP1BQ8IZD4 617 aaKnown RBP15.97■□□□□ 0.15
NUP54-213ENST00000513352 TTC39CQ8N584 583 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 OR10T2Q8NGX3 314 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 FAM81BQ96LP2 452 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 GUCD1Q96NT3 240 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 ERGIC2Q96RQ1 377 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 RTP3Q9BQQ7 232 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 CLSTN3Q9BQT9 956 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 OXCT2Q9BYC2 517 aaPredicted RBP15.97■□□□□ 0.15
NUP54-213ENST00000513352 DPEP3Q9H4B8 488 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 MTMR10Q9NXD2 777 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 CDH9Q9ULB4 789 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 BARX2Q9UMQ3 279 aaPredicted RBP15.97■□□□□ 0.15
NUP54-213ENST00000513352 FHOD1Q9Y613 1164 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 PLXNA3P51805 1871 aa15.97■□□□□ 0.15
NUP54-213ENST00000513352 TRANK1O15050 2925 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 ATP2C2O75185 946 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 GLUD1P00367 558 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 POLR2FP61218 127 aaKnown RBP15.96■□□□□ 0.15
NUP54-213ENST00000513352 ROR1Q01973 937 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 NR1I3Q14994 352 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 MDH1BQ5I0G3 518 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 INTS6LQ5JSJ4 861 aaKnown RBP15.96■□□□□ 0.15
NUP54-213ENST00000513352 IQCEQ6IPM2 695 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 TMEM270Q6UE05 265 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 EP400NLQ6ZTU2 488 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 ENOSF1Q7L5Y1 443 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 ACOT1Q86TX2 421 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 TNIP3Q96KP6 325 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 KREMEN1Q96MU8 473 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 PGLYRP2Q96PD5 576 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 ACBD6Q9BR61 282 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 NT5C1AQ9BXI3 368 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 ZCWPW1Q9H0M4 648 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 NLRC4Q9NPP4 1024 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 PLCB1Q9NQ66 1216 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 AJAP1Q9UKB5 411 aaPredicted RBP15.96■□□□□ 0.15
NUP54-213ENST00000513352 STXBP5LQ9Y2K9 1186 aa15.96■□□□□ 0.15
NUP54-213ENST00000513352 A0A1W2PQC6 194 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 TBC1D4O60343 1298 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 CLASP2O75122 1294 aaKnown RBP15.95■□□□□ 0.14
NUP54-213ENST00000513352 CILPO75339 1184 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 SPATA31D3P0C874 917 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 UCHL3P15374 230 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 RFX1P22670 979 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 ELF1P32519 619 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 GTF2F1P35269 517 aaKnown RBP eCLIP15.95■□□□□ 0.14
NUP54-213ENST00000513352 INCA1Q0VD86 236 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 CCDC85BQ15834 202 aaPredicted RBP15.95■□□□□ 0.14
NUP54-213ENST00000513352 DUSP6Q16828 381 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 CCDC142Q17RM4 750 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 UVSSAQ2YD98 709 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 SLC8B1Q6J4K2 584 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 SPATA31D4Q6ZUB0 917 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 CACNA2D4Q7Z3S7 1137 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 PPFIBP1Q86W92 1011 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 UNC93AQ86WB7 457 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 RBBP8NLQ8NC74 664 aaPredicted RBP15.95■□□□□ 0.14
NUP54-213ENST00000513352 B3GALNT2Q8NCR0 500 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 PPM1EQ8WY54 764 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 SPAG5Q96R06 1193 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 MED10Q9BTT4 135 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 ELOVL4Q9GZR5 314 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 GANQ9H2C0 597 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 ABI2Q9NYB9 513 aaPredicted RBP15.95■□□□□ 0.14
NUP54-213ENST00000513352 NME7Q9Y5B8 376 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 MYH10P35580 1976 aa15.95■□□□□ 0.14
NUP54-213ENST00000513352 WDR27A2RRH5 827 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 EPHB6O15197 1021 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 PTPN1P18031 435 aaKnown RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 CYP27A1Q02318 531 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 HYAL1Q12794 435 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 RAB33AQ14088 237 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 DRAP1Q14919 205 aaPredicted RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 SKIV2LQ15477 1246 aaKnown RBP15.94■□□□□ 0.14
NUP54-213ENST00000513352 SARM1Q6SZW1 724 aa15.94■□□□□ 0.14
NUP54-213ENST00000513352 RNF19BQ6ZMZ0 732 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms