RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TRAP1Q12931 704 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 CCDC157Q569K6 752 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 ATP6V1HQ9UI12 483 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 MICAL3Q7RTP6 2002 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 KIF21AQ7Z4S6 1674 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 RALGDSQ12967 914 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 PJA1Q8NG27 643 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 MOCS2O96007 188 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 SERPINB8P50452 374 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 NDUFB9Q9Y6M9 179 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 FGFR4P22455 802 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 PRELPP51888 382 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 RAD23AP54725 363 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 SGO1Q5FBB7 561 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF333Q96JL9 665 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 C11orf70Q9BRQ4 267 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 WWOXQ9NZC7 414 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 BTN3A3O00478 584 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 PPEF1O14829 653 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 CAMK2GQ13555 558 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 KLHL4Q9C0H6 718 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 MTIF3Q9H2K0 278 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 WDR35Q9P2L0 1181 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 POLR1DQ9Y2S0 133 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 ABCC4O15439 1325 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 KCNH2Q12809 1159 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 THNSL1Q8IYQ7 743 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 RFFLQ8WZ73 363 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 CATSPER2Q96P56 530 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 MGAT4AQ9UM21 535 aa14.49□□□□□ -0.09
CCDC88A-201ENST00000263630 LCP1P13796 627 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CCDC36Q8IYA8 594 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 GPD1LQ8N335 351 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 SIK3Q9Y2K2 1263 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CFAP43Q8NDM7 1665 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 SMCO3A2RU48 225 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 ERVV-2B6SEH9 535 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 GRK4P32298 578 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 PRPF3O43395 683 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CASP4P49662 377 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 SMCO1Q147U7 214 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CROCCP3Q8IVE0 287 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 DAPK2Q9UIK4 370 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 V9GYQ6 96 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 BTN3A2P78410 334 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 IL31Q6EBC2 164 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 MOV10L1Q9BXT6 1211 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 SH3BP1Q9Y3L3 701 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 A0A0D9SFI3 127 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 MGRN1O60291 552 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 GYG1P46976 350 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 PALB2Q86YC2 1186 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 BPIFA3Q9BQP9 254 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 APOL5Q9BWW9 433 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CD209Q9NNX6 404 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 ITIH2P19823 946 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 NUDT2P50583 147 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 CASP12Q6UXS9 341 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 EEPD1Q7L9B9 569 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 LRRC71Q8N4P6 559 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 FAM213AQ9BRX8 229 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 PRKD2Q9BZL6 878 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 UQCRBP14927 111 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 BTKQ06187 659 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 AGBL2Q5U5Z8 902 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 RASSF6Q6ZTQ3 369 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 C11orf57Q6ZUT1 292 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 PCMTD2Q9NV79 361 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 UBE2QL1A1L167 161 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 DOK7Q18PE1 504 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 FAM192AQ9GZU8 254 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 ILKAPQ9H0C8 392 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 PADI4Q9UM07 663 aa14.48□□□□□ -0.09
CCDC88A-201ENST00000263630 LMTK3Q96Q04 1460 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 CLPTM1O96005 669 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ADORA2BP29275 332 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 PTK7Q13308 1070 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF473Q8WTR7 871 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 DCAF4Q8WV16 495 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 LPIN1Q14693 890 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 STK33Q9BYT3 514 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 C6orf62Q9GZU0 229 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 GOLPH3Q9H4A6 298 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 WDR41Q9HAD4 459 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 COMMD8Q9NX08 183 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 VTI1BQ9UEU0 232 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ANAPC2Q9UJX6 822 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ARHGEF10O15013 1369 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 FANCAO15360 1455 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 PNMA6EA0A0J9YXQ4 647 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 CHN1P15882 459 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 MANSC1Q9H8J5 431 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 CAPN10Q9HC96 672 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 KLHL1Q9NR64 748 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 TRMT6Q9UJA5 497 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 BTBD3Q9Y2F9 522 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 PRXQ9BXM0 1461 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 A0A0X1KG70 313 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms