RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W RTT103Q05543 409 aa2.92□□□□□ -1.94
SSL1YLR005W KEI1Q06346 221 aa2.92□□□□□ -1.94
SSL1YLR005W MRPL35Q06678 367 aa2.92□□□□□ -1.94
SSL1YLR005W YJR112W-AQ3E743 109 aa2.92□□□□□ -1.94
SSL1YLR005W HUG1Q6Q5K6 68 aa2.92□□□□□ -1.94
SSL1YLR005W PET20Q99373 253 aa2.92□□□□□ -1.94
SSL1YLR005W MIR1P23641 311 aaKnown RBP2.91□□□□□ -1.94
SSL1YLR005W VMA16P23968 213 aa2.91□□□□□ -1.94
SSL1YLR005W TRR1P29509 319 aaKnown RBP2.91□□□□□ -1.94
SSL1YLR005W FMT1P32785 401 aa2.91□□□□□ -1.94
SSL1YLR005W MRPL27P36526 146 aaPredicted RBP2.91□□□□□ -1.94
SSL1YLR005W QDR3P38227 689 aa2.91□□□□□ -1.94
SSL1YLR005W YPT31P38555 223 aaKnown RBP2.91□□□□□ -1.94
SSL1YLR005W DOG2P38773 246 aa2.91□□□□□ -1.94
SSL1YLR005W DOG1P38774 246 aa2.91□□□□□ -1.94
SSL1YLR005W HTD2P38790 280 aaKnown RBP2.91□□□□□ -1.94
SSL1YLR005W ARO8P53090 500 aaKnown RBP2.91□□□□□ -1.94
SSL1YLR005W FYV6P53913 173 aa2.91□□□□□ -1.94
SSL1YLR005W TMA20P89886 181 aaPredicted RBP2.91□□□□□ -1.94
SSL1YLR005W YLR031WQ07978 186 aa2.91□□□□□ -1.94
SSL1YLR005W SCP1Q08873 200 aa2.91□□□□□ -1.94
SSL1YLR005W RPL24BP24000 155 aaKnown RBP2.9□□□□□ -1.94
SSL1YLR005W RRT1P38192 103 aa2.9□□□□□ -1.94
SSL1YLR005W MBA1P38300 278 aa2.9□□□□□ -1.94
SSL1YLR005W YER137CP40083 148 aaKnown RBP2.9□□□□□ -1.94
SSL1YLR005W POR2P40478 281 aa2.9□□□□□ -1.94
SSL1YLR005W GVP36P40531 326 aaKnown RBP2.9□□□□□ -1.94
SSL1YLR005W CAX4P53223 239 aa2.9□□□□□ -1.94
SSL1YLR005W COX12Q01519 83 aa2.9□□□□□ -1.94
SSL1YLR005W SPO19Q03029 223 aa2.9□□□□□ -1.94
SSL1YLR005W YMR181CQ03231 154 aa2.9□□□□□ -1.94
SSL1YLR005W PAM18Q07914 168 aa2.9□□□□□ -1.94
SSL1YLR005W YPL199CQ08954 240 aa2.9□□□□□ -1.94
SSL1YLR005W YLR112WQ12130 139 aa2.9□□□□□ -1.94
SSL1YLR005W SCM3Q12334 223 aa2.9□□□□□ -1.94
SSL1YLR005W TAR1Q8TGM6 124 aa2.9□□□□□ -1.94
SSL1YLR005W MRS3P10566 314 aa2.89□□□□□ -1.95
SSL1YLR005W RPL3P14126 387 aaKnown RBP2.89□□□□□ -1.95
SSL1YLR005W MRS4P23500 304 aa2.89□□□□□ -1.95
SSL1YLR005W CPR4P25334 318 aa2.89□□□□□ -1.95
SSL1YLR005W GPX2P38143 162 aa2.89□□□□□ -1.95
SSL1YLR005W HAM1P47119 197 aaKnown RBP2.89□□□□□ -1.95
SSL1YLR005W TDA4P47153 279 aa2.89□□□□□ -1.95
SSL1YLR005W SWT21P53873 357 aaPredicted RBP2.89□□□□□ -1.95
SSL1YLR005W ATG39Q06159 398 aa2.89□□□□□ -1.95
SSL1YLR005W SYM1Q06563 197 aa2.89□□□□□ -1.95
SSL1YLR005W IRC23Q08416 157 aa2.89□□□□□ -1.95
SSL1YLR005W YOR283WQ12040 230 aaKnown RBP2.89□□□□□ -1.95
SSL1YLR005W DCP1Q12517 231 aaPredicted RBP2.89□□□□□ -1.95
SSL1YLR005W YGL258W-AQ3E740 77 aa2.89□□□□□ -1.95
SSL1YLR005W SOD1P00445 154 aaKnown RBP2.88□□□□□ -1.95
SSL1YLR005W CYC3P06182 269 aa2.88□□□□□ -1.95
SSL1YLR005W YBL071CP38185 102 aa2.88□□□□□ -1.95
SSL1YLR005W YAR068WP39564 161 aa2.88□□□□□ -1.95
SSL1YLR005W CAT5P41735 233 aa2.88□□□□□ -1.95
SSL1YLR005W ARP3P47117 449 aaKnown RBP2.88□□□□□ -1.95
SSL1YLR005W MGR3Q04472 501 aa2.88□□□□□ -1.95
SSL1YLR005W LDS2Q08218 356 aa2.88□□□□□ -1.95
SSL1YLR005W TIM18Q08749 192 aa2.88□□□□□ -1.95
SSL1YLR005W YOR385WQ08909 290 aa2.88□□□□□ -1.95
SSL1YLR005W MSH5Q12175 901 aa2.88□□□□□ -1.95
SSL1YLR005W CAP2P13517 287 aa2.87□□□□□ -1.95
SSL1YLR005W POP5P28005 173 aa2.87□□□□□ -1.95
SSL1YLR005W MRP17P28778 131 aa2.87□□□□□ -1.95
SSL1YLR005W RNP1P32385 249 aa2.87□□□□□ -1.95
SSL1YLR005W UPS2P35200 230 aa2.87□□□□□ -1.95
SSL1YLR005W ERV15P38312 142 aa2.87□□□□□ -1.95
SSL1YLR005W COS8P38723 381 aa2.87□□□□□ -1.95
SSL1YLR005W BFR1P38934 470 aaKnown RBP RIP-Chip data2.87□□□□□ -1.95not detected
SSL1YLR005W JLP2P40206 208 aa2.87□□□□□ -1.95
SSL1YLR005W IRC18P47056 224 aa2.87□□□□□ -1.95
SSL1YLR005W IZH1Q03419 316 aa2.87□□□□□ -1.95
SSL1YLR005W THI74Q04083 370 aa2.87□□□□□ -1.95
SSL1YLR005W FMP42Q04991 504 aa2.87□□□□□ -1.95
SSL1YLR005W YPL162CQ12042 273 aa2.87□□□□□ -1.95
SSL1YLR005W QCR2P07257 368 aa2.87□□□□□ -1.95
SSL1YLR005W NRG2P38082 220 aa2.87□□□□□ -1.95
SSL1YLR005W POP8P38208 133 aa2.87□□□□□ -1.95
SSL1YLR005W YHR122WP38829 231 aa2.87□□□□□ -1.95
SSL1YLR005W SNF11P38956 169 aa2.87□□□□□ -1.95
SSL1YLR005W NSA2P40078 261 aaKnown RBP2.87□□□□□ -1.95
SSL1YLR005W DFG10P40526 253 aa2.87□□□□□ -1.95
SSL1YLR005W AIM25P47140 327 aa2.87□□□□□ -1.95
SSL1YLR005W MIC26P50087 233 aa2.87□□□□□ -1.95
SSL1YLR005W RDS3Q06835 107 aaPredicted RBP2.87□□□□□ -1.95
SSL1YLR005W YPS3Q12303 508 aa2.87□□□□□ -1.95
SSL1YLR005W MRP2P10663 115 aaPredicted RBP2.86□□□□□ -1.95
SSL1YLR005W PAN3P36102 679 aaPredicted RBP2.86□□□□□ -1.95
SSL1YLR005W SIM1P40472 476 aa2.86□□□□□ -1.95
SSL1YLR005W RTS2P40962 232 aa2.86□□□□□ -1.95
SSL1YLR005W YGR050CP53231 118 aa2.86□□□□□ -1.95
SSL1YLR005W OCA2P53949 197 aa2.86□□□□□ -1.95
SSL1YLR005W FEX1Q08913 375 aa2.86□□□□□ -1.95
SSL1YLR005W FEX2Q08991 375 aa2.86□□□□□ -1.95
SSL1YLR005W PAA1Q12447 191 aaKnown RBP2.86□□□□□ -1.95
SSL1YLR005W AGC1Q12482 902 aa2.86□□□□□ -1.95
SSL1YLR005W DFR1P07807 211 aaKnown RBP RIP-Chip data2.85□□□□□ -1.95not detected
SSL1YLR005W FPR2P32472 135 aa2.85□□□□□ -1.95
SSL1YLR005W AVT5P38176 459 aa2.85□□□□□ -1.95
SSL1YLR005W MST28P39552 234 aa2.85□□□□□ -1.95
Retrieved 100 of 5,963 RNA–protein pairs in 59.5 ms