RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W RPS24AP0CX31 135 aaKnown RBP0.17□□□□□ -2.38
RPF1YHR088W RPS24BP0CX32 135 aaKnown RBP0.17□□□□□ -2.38
RPF1YHR088W RFA3P26755 122 aaKnown RBP0.17□□□□□ -2.38
RPF1YHR088W YFL019CP43576 117 aa0.17□□□□□ -2.38
RPF1YHR088W YGL230CP53074 147 aa0.17□□□□□ -2.38
RPF1YHR088W YDC1Q02896 317 aa0.17□□□□□ -2.38
RPF1YHR088W PIR1Q03178 341 aa0.17□□□□□ -2.38
RPF1YHR088W YOL013W-AP0C272 63 aaPredicted RBP0.16□□□□□ -2.38
RPF1YHR088W MSS2P40990 351 aa0.16□□□□□ -2.38
RPF1YHR088W UPS1Q05776 175 aa0.16□□□□□ -2.38
RPF1YHR088W DAS2Q12084 232 aa0.16□□□□□ -2.38
RPF1YHR088W YHR213W-BQ8TGK1 99 aa0.16□□□□□ -2.38
RPF1YHR088W DUR1,2P32528 1835 aaKnown RBP0.15□□□□□ -2.38
RPF1YHR088W NTG1P31378 399 aa0.15□□□□□ -2.39
RPF1YHR088W SHB17P36136 271 aaKnown RBP0.15□□□□□ -2.39
RPF1YHR088W HHY1P39982 102 aa0.15□□□□□ -2.39
RPF1YHR088W NRK1P53915 240 aa0.15□□□□□ -2.39
RPF1YHR088W DML1Q03652 475 aa0.15□□□□□ -2.39
RPF1YHR088W YOR342CQ12182 319 aa0.15□□□□□ -2.39
RPF1YHR088W YLR412C-AQ3E742 68 aa0.15□□□□□ -2.39
RPF1YHR088W GPI14P47088 403 aaKnown RBP0.14□□□□□ -2.39
RPF1YHR088W ATP20Q12233 115 aa0.14□□□□□ -2.39
RPF1YHR088W ARG80P07249 177 aa0.13□□□□□ -2.39
RPF1YHR088W YCR001WP25347 104 aa0.13□□□□□ -2.39
RPF1YHR088W NSA2P40078 261 aaKnown RBP0.13□□□□□ -2.39
RPF1YHR088W CCS1P40202 249 aaKnown RBP0.13□□□□□ -2.39
RPF1YHR088W YNL184CP53876 108 aa0.13□□□□□ -2.39
RPF1YHR088W GRX5Q02784 150 aa0.13□□□□□ -2.39
RPF1YHR088W YRA2P36036 203 aaKnown RBP RIP-Chip data0.12□□□□□ -2.39not detected
RPF1YHR088W NSG1P38837 291 aa0.12□□□□□ -2.39
RPF1YHR088W HHT1P61830 136 aa0.12□□□□□ -2.39
RPF1YHR088W GIS3Q12418 502 aa0.12□□□□□ -2.39
RPF1YHR088W HTB1P02293 131 aaKnown RBP0.11□□□□□ -2.39
RPF1YHR088W HTB2P02294 131 aa0.11□□□□□ -2.39
RPF1YHR088W RRT1P38192 103 aa0.11□□□□□ -2.39
RPF1YHR088W MMS2P53152 137 aa0.11□□□□□ -2.39
RPF1YHR088W ATG41Q12048 136 aa0.11□□□□□ -2.39
RPF1YHR088W PRE1P22141 198 aaKnown RBP0.1□□□□□ -2.39
RPF1YHR088W RUD3Q12234 484 aaKnown RBP0.1□□□□□ -2.39
RPF1YHR088W YOR381W-AQ3E804 55 aa0.1□□□□□ -2.39
RPF1YHR088W YLR422WQ06409 1932 aa0.1□□□□□ -2.39
RPF1YHR088W HFA1P32874 2273 aa0.1□□□□□ -2.39
RPF1YHR088W PGA2P53903 129 aa0.09□□□□□ -2.4
RPF1YHR088W PTC1P35182 281 aa0.08□□□□□ -2.4
RPF1YHR088W PGA1P53896 198 aa0.08□□□□□ -2.4
RPF1YHR088W KIN28P06242 306 aa0.07□□□□□ -2.4
RPF1YHR088W CBF1P17106 351 aa0.07□□□□□ -2.4
RPF1YHR088W RTC4P53850 401 aa0.07□□□□□ -2.4
RPF1YHR088W YKR005CQ02203 525 aa0.07□□□□□ -2.4
RPF1YHR088W ARO80Q04052 950 aa0.07□□□□□ -2.4
RPF1YHR088W FCY1Q12178 158 aa0.07□□□□□ -2.4
RPF1YHR088W YPR014CQ6B0W2 109 aa0.07□□□□□ -2.4
RPF1YHR088W YCL012CQ8J0M4 134 aa0.07□□□□□ -2.4
RPF1YHR088W IGO2Q9P305 131 aa0.07□□□□□ -2.4
RPF1YHR088W APS3P47064 194 aa0.06□□□□□ -2.4
RPF1YHR088W SBH1P52870 82 aa0.06□□□□□ -2.4
RPF1YHR088W ADE1P27616 306 aa0.05□□□□□ -2.4
RPF1YHR088W POG1P40473 351 aa0.05□□□□□ -2.4
RPF1YHR088W GAL83Q04739 417 aa0.05□□□□□ -2.4
RPF1YHR088W YDL085C-AQ3E7B7 68 aaKnown RBP0.05□□□□□ -2.4
RPF1YHR088W RPL43AP0CX25 92 aaKnown RBP0.04□□□□□ -2.4
RPF1YHR088W RPL43BP0CX26 92 aa0.04□□□□□ -2.4
RPF1YHR088W MATALPHA2P0CY08 210 aa0.04□□□□□ -2.4
RPF1YHR088W HMLALPHA2P0CY09 210 aa0.04□□□□□ -2.4
RPF1YHR088W GCY1P14065 312 aaKnown RBP RIP-Chip data0.04□□□□□ -2.4not detected
RPF1YHR088W HSP30P25619 332 aa0.04□□□□□ -2.4
RPF1YHR088W MRPS17Q03246 237 aaPredicted RBP0.04□□□□□ -2.4
RPF1YHR088W RIM9Q04734 239 aa0.04□□□□□ -2.4
RPF1YHR088W CLG1P35190 452 aa0.03□□□□□ -2.4
RPF1YHR088W CIN5P40917 295 aa0.03□□□□□ -2.4
RPF1YHR088W PAC10P48363 199 aa0.03□□□□□ -2.4
RPF1YHR088W GPI17Q04080 534 aa0.03□□□□□ -2.4
RPF1YHR088W AVO2Q04749 426 aa0.03□□□□□ -2.4
RPF1YHR088W YOL024WQ08172 172 aa0.03□□□□□ -2.4
RPF1YHR088W QCR7P00128 127 aa0.02□□□□□ -2.41
RPF1YHR088W CPR5P35176 225 aa0.02□□□□□ -2.41
RPF1YHR088W YMR141CP40211 102 aa0.02□□□□□ -2.41
RPF1YHR088W MOB1P40484 314 aa0.02□□□□□ -2.41
RPF1YHR088W YOR072WQ08486 104 aa0.02□□□□□ -2.41
RPF1YHR088W MPD1Q12404 318 aaKnown RBP0.02□□□□□ -2.41
RPF1YHR088W SEC14P24280 304 aaKnown RBP0.01□□□□□ -2.41
RPF1YHR088W FYV4P38783 130 aaPredicted RBP0.01□□□□□ -2.41
RPF1YHR088W CCC1P47818 322 aa0.01□□□□□ -2.41
RPF1YHR088W VPS28Q02767 242 aa0.01□□□□□ -2.41
RPF1YHR088W YML079WQ03629 201 aa0.01□□□□□ -2.41
RPF1YHR088W ROM2P51862 1356 aaKnown RBP0.01□□□□□ -2.41
RPF1YHR088W TRX3P25372 127 aa0□□□□□ -2.41
RPF1YHR088W YNL200CP40165 246 aaKnown RBP0□□□□□ -2.41
RPF1YHR088W GLC8P41818 229 aa0□□□□□ -2.41
RPF1YHR088W NQM1P53228 333 aaPredicted RBP0□□□□□ -2.41
RPF1YHR088W RNH1Q04740 348 aa0□□□□□ -2.41
RPF1YHR088W YPR127WQ06494 345 aa0□□□□□ -2.41
RPF1YHR088W YDL157CQ12082 118 aa0□□□□□ -2.41
RPF1YHR088W RIF1P29539 1916 aa-0.01□□□□□ -2.41
RPF1YHR088W RPS25BP0C0T4 108 aaKnown RBP-0.01□□□□□ -2.41
RPF1YHR088W TAH1P25638 111 aaPredicted RBP-0.01□□□□□ -2.41
RPF1YHR088W YGR269WP40326 108 aa-0.01□□□□□ -2.41
RPF1YHR088W FMP32P43557 207 aa-0.01□□□□□ -2.41
RPF1YHR088W AIM34Q03673 198 aa-0.01□□□□□ -2.41
RPF1YHR088W RPS25AQ3E792 108 aaPredicted RBP-0.01□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms