RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	PEX31	P53203	462 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	THG1	P53215	237 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	LSM3	P57743	89 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	TIM8	P57744	87 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	HNT1	Q04344	158 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	ECM18	Q04623	453 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	TAZ1	Q06510	381 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YPR174C	Q06616	221 aa	Predicted RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	LDB18	Q07887	179 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PAU23	Q07987	124 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YLR050C	Q12155	161 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	YRA1	Q12159	226 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	PST2	Q12335	198 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	JLP1	Q12358	412 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PAU17	Q12370	124 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	FRE6	Q12473	712 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	STE7	P06784	515 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	RPL40A	P0CH08	128 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	RPL40B	P0CH09	128 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	ERD2	P18414	219 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PHO80	P20052	293 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	RRT12	P25381	491 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	SCM4	P32564	187 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	RAD23	P32628	398 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	PAN3	P36102	679 aa	Predicted RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	YKR041W	P36134	250 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	TVP38	P36164	337 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	ATG8	P38182	117 aa	RIP-Chip data	0.83	□□□□□ -2.28	not detected
SMC1	YFL008W	RPS20	P38701	121 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	YEA6	P39953	335 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	HPA3	P39979	161 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	EDC3	P39998	551 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	SPC25	P40014	221 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	AYR1	P40471	297 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	ICE2	P40499	491 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	DFG10	P40526	253 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PAU15	P40585	124 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	CAT5	P41735	233 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PRM10	P42946	383 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	RPA43	P46669	326 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	TTI2	P47168	421 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	DAN1	P47178	298 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YNR066C	P53752	436 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YNL260C	P53846	198 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PGA1	P53896	198 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	DIA1	P54005	336 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	OSH6	Q02201	448 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	OST6	Q03723	332 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YDR278C	Q05612	105 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YLR179C	Q06252	201 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	ANT1	Q06497	328 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	HEM25	Q07534	307 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	PLB3	Q08108	686 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YOL029C	Q08187	201 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	FSF1	Q12029	327 aa	Known RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	SME1	Q12330	94 aa	Predicted RBP	0.83	□□□□□ -2.28
SMC1	YFL008W	MHT1	Q12525	324 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	VMA9	Q3E7B6	73 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	YCL012C	Q8J0M4	134 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	ATG40	Q99325	256 aa		0.83	□□□□□ -2.28
SMC1	YFL008W	SIR2	P06700	562 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	FCY2	P17064	533 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PHO85	P17157	305 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YCR023C	P25351	611 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RPL16A	P26784	199 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	CAT2	P32796	670 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	YKL187C	P34231	750 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SOL2	P37262	315 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	LSM2	P38203	95 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	URA8	P38627	578 aa	Predicted RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	BDH1	P39714	382 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	HMF1	P40037	129 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	NSA2	P40078	261 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	FLX1	P40464	311 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YKE4	P40544	346 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	HAC1	P41546	238 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GON7	P46984	123 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	COQ5	P49017	307 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	NIF3	P53081	288 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	UBC7	Q02159	165 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MRX11	Q03079	207 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YML096W	Q04489	525 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	AVO2	Q04749	426 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	FCF1	Q05498	189 aa	Predicted RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	KEI1	Q06346	221 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GPI11	Q06636	219 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YOL024W	Q08172	172 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YDL211C	Q12121	372 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	FCY1	Q12178	158 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PRP46	Q12417	451 aa	Predicted RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	MSW1	P04803	379 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	STE18	P18852	110 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GPI12	P23797	304 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YCR085W	P25650	117 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	TKL2	P33315	681 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MCH2	P36032	473 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MRPL28	P36527	147 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PDX3	P38075	228 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	IML3	P38265	245 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	ATX1	P38636	73 aa		0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 58.6 ms