RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W MRP1P10662 321 aaKnown RBP2.03□□□□□ -2.08
PRE1YER012W MRPS28P21771 286 aa2.03□□□□□ -2.08
PRE1YER012W IDP1P21954 428 aaKnown RBP2.03□□□□□ -2.08
PRE1YER012W ATG22P25568 528 aa2.03□□□□□ -2.08
PRE1YER012W RPL16BP26785 198 aaKnown RBP2.03□□□□□ -2.08
PRE1YER012W PEX4P29340 183 aa2.03□□□□□ -2.08
PRE1YER012W ECM4P36156 370 aa2.03□□□□□ -2.08
PRE1YER012W PAU24P38155 120 aa2.03□□□□□ -2.08
PRE1YER012W UMP1P38293 148 aa2.03□□□□□ -2.08
PRE1YER012W RPA43P46669 326 aa2.03□□□□□ -2.08
PRE1YER012W HIT1P46973 164 aa2.03□□□□□ -2.08
PRE1YER012W DOC1P53068 250 aa2.03□□□□□ -2.08
PRE1YER012W YGL204CP53089 101 aa2.03□□□□□ -2.08
PRE1YER012W SDS23P53172 527 aa2.03□□□□□ -2.08
PRE1YER012W YNR066CP53752 436 aa2.03□□□□□ -2.08
PRE1YER012W NRK1P53915 240 aa2.03□□□□□ -2.08
PRE1YER012W YOR186WQ08560 144 aa2.03□□□□□ -2.08
PRE1YER012W POM33Q12164 279 aa2.03□□□□□ -2.08
PRE1YER012W TFC7Q12415 435 aa2.03□□□□□ -2.08
PRE1YER012W YLR099W-AQ3E798 87 aa2.03□□□□□ -2.08
PRE1YER012W YGR035W-AQ45U48 73 aa2.03□□□□□ -2.08
PRE1YER012W YEL009C-AA0A023PZF2 135 aa2.02□□□□□ -2.09
PRE1YER012W TDH2P00358 332 aaKnown RBP2.02□□□□□ -2.09
PRE1YER012W RPL25P04456 142 aaKnown RBP2.02□□□□□ -2.09
PRE1YER012W COX9P07255 59 aa2.02□□□□□ -2.09
PRE1YER012W PRE7P23724 241 aaKnown RBP2.02□□□□□ -2.09
PRE1YER012W YCR025CP25352 136 aa2.02□□□□□ -2.09
PRE1YER012W MIG1P27705 504 aa2.02□□□□□ -2.09
PRE1YER012W YJL218WP40892 196 aaKnown RBP2.02□□□□□ -2.09
PRE1YER012W OTU1P43558 301 aa2.02□□□□□ -2.09
PRE1YER012W XPT1P47165 209 aa2.02□□□□□ -2.09
PRE1YER012W HST4P53688 370 aa2.02□□□□□ -2.09
PRE1YER012W HSK3P69852 69 aa2.02□□□□□ -2.09
PRE1YER012W IRC23Q08416 157 aa2.02□□□□□ -2.09
PRE1YER012W HIS3P06633 220 aa2.01□□□□□ -2.09
PRE1YER012W YHR212W-AP0CX91 67 aa2.01□□□□□ -2.09
PRE1YER012W MATALPHA1P0CY06 175 aa2.01□□□□□ -2.09
PRE1YER012W HMLALPHA1P0CY07 175 aa2.01□□□□□ -2.09
PRE1YER012W DPB2P24482 689 aaPredicted RBP2.01□□□□□ -2.09
PRE1YER012W OCH1P31755 480 aa2.01□□□□□ -2.09
PRE1YER012W PAU2P32612 120 aa2.01□□□□□ -2.09
PRE1YER012W RPB7P34087 171 aa2.01□□□□□ -2.09
PRE1YER012W CBT1P36038 271 aaPredicted RBP2.01□□□□□ -2.09
PRE1YER012W MRX5P47007 382 aa2.01□□□□□ -2.09
PRE1YER012W GPI14P47088 403 aaKnown RBP2.01□□□□□ -2.09
PRE1YER012W MRH4P53166 561 aa2.01□□□□□ -2.09
PRE1YER012W YGR042WP53227 271 aa2.01□□□□□ -2.09
PRE1YER012W FIT1Q04433 528 aa2.01□□□□□ -2.09
PRE1YER012W BER1Q06688 274 aaKnown RBP2.01□□□□□ -2.09
PRE1YER012W YOR292CQ08743 309 aa2.01□□□□□ -2.09
PRE1YER012W ATG41Q12048 136 aa2.01□□□□□ -2.09
PRE1YER012W YPR013CQ12145 317 aa2.01□□□□□ -2.09
PRE1YER012W TRM10Q12400 293 aa2.01□□□□□ -2.09
PRE1YER012W SEN2P16658 377 aa2□□□□□ -2.09
PRE1YER012W STF2P16965 84 aa2□□□□□ -2.09
PRE1YER012W COX10P21592 462 aa2□□□□□ -2.09
PRE1YER012W TOM40P23644 387 aaKnown RBP2□□□□□ -2.09
PRE1YER012W YBL010CP32788 280 aa2□□□□□ -2.09
PRE1YER012W SPT4P32914 102 aaPredicted RBP2□□□□□ -2.09
PRE1YER012W SNC2P33328 115 aa2□□□□□ -2.09
PRE1YER012W CPR5P35176 225 aa2□□□□□ -2.09
PRE1YER012W SFK1P35735 353 aa2□□□□□ -2.09
PRE1YER012W YRA2P36036 203 aaKnown RBP RIP-Chip data2□□□□□ -2.09not detected
PRE1YER012W RCN1P36054 211 aa2□□□□□ -2.09
PRE1YER012W NVJ1P38881 321 aa2□□□□□ -2.09
PRE1YER012W YJR056CP47115 236 aa2□□□□□ -2.09
PRE1YER012W BXI1P48558 297 aa2□□□□□ -2.09
PRE1YER012W PEX30Q06169 523 aa2□□□□□ -2.09
PRE1YER012W ATG17Q06410 417 aa2□□□□□ -2.09
PRE1YER012W ARR2Q06597 130 aa2□□□□□ -2.09
PRE1YER012W BBP1Q12365 385 aa2□□□□□ -2.09
PRE1YER012W ODC2Q99297 307 aa2□□□□□ -2.09
PRE1YER012W VMA6P32366 345 aaKnown RBP1.99□□□□□ -2.09
PRE1YER012W NRG2P38082 220 aa1.99□□□□□ -2.09
PRE1YER012W PRS2P38620 318 aaKnown RBP1.99□□□□□ -2.09
PRE1YER012W CCS1P40202 249 aaKnown RBP1.99□□□□□ -2.09
PRE1YER012W YIA6P40556 373 aa1.99□□□□□ -2.09
PRE1YER012W YIR035CP40579 254 aa1.99□□□□□ -2.09
PRE1YER012W YJL118WP47022 219 aa1.99□□□□□ -2.09
PRE1YER012W VPS55P47111 140 aa1.99□□□□□ -2.09
PRE1YER012W YAE1P47118 141 aaPredicted RBP1.99□□□□□ -2.09
PRE1YER012W TTI2P47168 421 aa1.99□□□□□ -2.09
PRE1YER012W YPL067CQ02754 198 aa1.99□□□□□ -2.09
PRE1YER012W SPG4Q04438 115 aa1.99□□□□□ -2.09
PRE1YER012W DPP1Q05521 289 aa1.99□□□□□ -2.09
PRE1YER012W UPS1Q05776 175 aa1.99□□□□□ -2.09
PRE1YER012W ECM19Q06011 112 aa1.99□□□□□ -2.09
PRE1YER012W YOS1Q3E834 85 aa1.99□□□□□ -2.09
PRE1YER012W TAR1Q8TGM6 124 aa1.99□□□□□ -2.09
PRE1YER012W MED11Q99278 115 aa1.99□□□□□ -2.09
PRE1YER012W ATG40Q99325 256 aa1.99□□□□□ -2.09
PRE1YER012W RPL24BP24000 155 aaKnown RBP1.98□□□□□ -2.09
PRE1YER012W SPS18P32572 300 aa1.98□□□□□ -2.09
PRE1YER012W DDI1P40087 428 aa1.98□□□□□ -2.09
PRE1YER012W YGR025WP53216 100 aa1.98□□□□□ -2.09
PRE1YER012W CPD1P53314 239 aa1.98□□□□□ -2.09
PRE1YER012W ALG9P53868 555 aaKnown RBP1.98□□□□□ -2.09
PRE1YER012W GPN3Q06543 272 aa1.98□□□□□ -2.09
PRE1YER012W DFM1Q12743 341 aaKnown RBP1.98□□□□□ -2.09
PRE1YER012W HUG1Q6Q5K6 68 aa1.98□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 43.4 ms