RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS54	YDR027C	YDR278C	Q05612	105 aa		0.92	□□□□□ -2.26
VPS54	YDR027C	ATG10	Q07879	167 aa		0.92	□□□□□ -2.26
VPS54	YDR027C	NUF2	P33895	451 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	RIO2	P40160	425 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	RSM25	P40496	264 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	FMP32	P43557	207 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	MMS2	P53152	137 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YGR050C	P53231	118 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YNL010W	P53981	241 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	DID2	P69771	204 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	ABF2	Q02486	183 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YMR279C	Q03263	540 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YMD8	Q03697	442 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	SPG3	Q04398	127 aa	Predicted RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	YMR253C	Q04835	414 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	DYN3	Q04949	312 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YOL160W	Q08321	113 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	TDA8	Q6B2U8	126 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	CDC7	P06243	507 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	ADH3	P07246	375 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	MEI4	P29467	408 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	ATP7	P30902	174 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	LHP1	P33399	275 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	UTP30	P36144	274 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	YHR180W	P38868	163 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	YIL086C	P40503	102 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	MOG1	P47123	218 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	LSM7	P53905	115 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	GIM5	Q04493	163 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	USB1	Q12208	290 aa	Known RBP	0.91	□□□□□ -2.26
VPS54	YDR027C	SLO1	Q3E784	85 aa		0.91	□□□□□ -2.26
VPS54	YDR027C	RPL25	P04456	142 aa	Known RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	YLR156W	P0CE96	114 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YLR159W	P0CE97	114 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YLR161W	P0CE98	114 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MAK31	P23059	88 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	ATG22	P25568	528 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	BUB2	P26448	306 aa	Predicted RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	SCM4	P32564	187 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	SEC17	P32602	292 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	OPY1	P38271	328 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	POP4	P38336	279 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MRPL49	P40858	161 aa	Predicted RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	PRM10	P42946	383 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	TMA22	P47089	198 aa	Predicted RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	AIM25	P47140	327 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YML108W	Q03759	105 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	SDH7	Q04401	133 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YPL162C	Q12042	273 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MDM32	Q12171	622 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	PSF1	Q12488	208 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	CYR1	P08678	2026 aa	Known RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	REP2	P03872	296 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	RPL9A	P05738	191 aa	Known RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	NMT1	P14743	455 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	CCA1	P21269	546 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	HSP30	P25619	332 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MRPL28	P36527	147 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	SHG1	P38337	142 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	RMD6	P39975	231 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MNN5	P46982	586 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	RPL9B	P51401	191 aa	Known RBP	0.9	□□□□□ -2.27
VPS54	YDR027C	YGR026W	P53217	278 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	PLP1	Q04004	230 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YPD1	Q07688	167 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YNG1	Q08465	219 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MCP1	Q12106	302 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	YIR021W-A	Q3E739	70 aa		0.9	□□□□□ -2.27
VPS54	YDR027C	MSW1	P04803	379 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	PBI2	P0CT04	75 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	GSP1	P32835	219 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	GSP2	P32836	220 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	VMA11	P32842	164 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	CLB6	P32943	380 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YGL235W	P53071	178 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	COS6	P53344	381 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	MZM1	Q03429	123 aa	Predicted RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	RAV2	Q03956	351 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YPR127W	Q06494	345 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YLR036C	Q07986	203 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	MHT1	Q12525	324 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YFR032C-B	Q8TGU2	87 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	MRS1	P07266	363 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YJL197C-A	P0C5P0	93 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	MRPS28	P21771	286 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	TFC1	P32367	649 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	UTR5	P32630	166 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	YOR062C	P36025	268 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	FES1	P38260	290 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	AST2	P39945	430 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	GLR1	P41921	483 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	APS3	P47064	194 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	VMA10	P48836	114 aa	Known RBP	0.89	□□□□□ -2.27
VPS54	YDR027C	AIF1	P52923	378 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	NEJ1	Q06148	342 aa		0.89	□□□□□ -2.27
VPS54	YDR027C	FAS1	P07149	2051 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	SIR2	P06700	562 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	IDP1	P21954	428 aa	Known RBP	0.88	□□□□□ -2.27
VPS54	YDR027C	TRX3	P25372	127 aa		0.88	□□□□□ -2.27
VPS54	YDR027C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms