RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C COX10P21592 462 aa3.36□□□□□ -1.87
CDC9YDL164C RPC19P28000 142 aaKnown RBP3.36□□□□□ -1.87
CDC9YDL164C YJL218WP40892 196 aaKnown RBP3.36□□□□□ -1.87
CDC9YDL164C ERJ5P43613 295 aaPredicted RBP3.36□□□□□ -1.87
CDC9YDL164C YML108WQ03759 105 aa3.36□□□□□ -1.87
CDC9YDL164C RAV2Q03956 351 aa3.36□□□□□ -1.87
CDC9YDL164C PLP1Q04004 230 aa3.36□□□□□ -1.87
CDC9YDL164C YLR099W-AQ3E798 87 aa3.36□□□□□ -1.87
CDC9YDL164C YAL067W-AQ8TGK6 75 aa3.36□□□□□ -1.87
CDC9YDL164C URB1P34241 1764 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C UTP11P34247 250 aaPredicted RBP3.35□□□□□ -1.87
CDC9YDL164C PGD1P40356 397 aa3.35□□□□□ -1.87
CDC9YDL164C YKR005CQ02203 525 aa3.35□□□□□ -1.87
CDC9YDL164C COF1Q03048 143 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C YOL029CQ08187 201 aa3.35□□□□□ -1.87
CDC9YDL164C SRL1Q08673 210 aa3.35□□□□□ -1.87
CDC9YDL164C HTL1Q9URQ5 78 aa3.35□□□□□ -1.87
CDC9YDL164C UTP10P42945 1769 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C MRP49P32388 137 aa3.35□□□□□ -1.87
CDC9YDL164C ASK1P35734 292 aa3.35□□□□□ -1.87
CDC9YDL164C VTC1P40046 129 aaRIP-Chip data3.35□□□□□ -1.87not detected
CDC9YDL164C DLS1P40366 167 aa3.35□□□□□ -1.87
CDC9YDL164C GLR1P41921 483 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C SMD3P43321 101 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C TDA4P47153 279 aa3.35□□□□□ -1.87
CDC9YDL164C PBA1Q05778 276 aa3.35□□□□□ -1.87
CDC9YDL164C FYV12Q08559 129 aa3.35□□□□□ -1.87
CDC9YDL164C SMT3Q12306 101 aaKnown RBP3.35□□□□□ -1.87
CDC9YDL164C BCK1Q01389 1478 aa3.34□□□□□ -1.87
CDC9YDL164C YRF1-2P40105 1681 aa3.34□□□□□ -1.87
CDC9YDL164C YLR156WP0CE96 114 aa3.34□□□□□ -1.87
CDC9YDL164C YLR159WP0CE97 114 aa3.34□□□□□ -1.87
CDC9YDL164C YLR161WP0CE98 114 aa3.34□□□□□ -1.87
CDC9YDL164C DIG2Q03373 323 aaKnown RBP3.34□□□□□ -1.87
CDC9YDL164C IES3Q12345 250 aa3.34□□□□□ -1.87
CDC9YDL164C YPR170W-BP0C5R9 85 aa3.33□□□□□ -1.88
CDC9YDL164C SDH3P33421 198 aa3.33□□□□□ -1.88
CDC9YDL164C BOR1P53838 576 aa3.33□□□□□ -1.88
CDC9YDL164C VPS71Q03433 280 aa3.33□□□□□ -1.88
CDC9YDL164C YDR278CQ05612 105 aa3.33□□□□□ -1.88
CDC9YDL164C PSF1Q12488 208 aa3.33□□□□□ -1.88
CDC9YDL164C APC1P53886 1748 aa3.33□□□□□ -1.88
CDC9YDL164C NMT1P14743 455 aa3.33□□□□□ -1.88
CDC9YDL164C GSP1P32835 219 aaKnown RBP3.33□□□□□ -1.88
CDC9YDL164C GSP2P32836 220 aaKnown RBP3.33□□□□□ -1.88
CDC9YDL164C OM14P38325 134 aa3.33□□□□□ -1.88
CDC9YDL164C RPS20P38701 121 aaKnown RBP3.33□□□□□ -1.88
CDC9YDL164C RPE1P46969 238 aa3.33□□□□□ -1.88
CDC9YDL164C YOR289WQ12012 251 aaPredicted RBP3.33□□□□□ -1.88
CDC9YDL164C AKR2Q12013 749 aa3.33□□□□□ -1.88
CDC9YDL164C SNM1P40993 198 aa3.32□□□□□ -1.88
CDC9YDL164C MEP2P41948 499 aa3.32□□□□□ -1.88
CDC9YDL164C SLO1Q3E784 85 aa3.32□□□□□ -1.88
CDC9YDL164C MED6P38782 295 aa3.32□□□□□ -1.88
CDC9YDL164C OST2P46964 130 aa3.32□□□□□ -1.88
CDC9YDL164C YOL014WQ08110 124 aa3.32□□□□□ -1.88
CDC9YDL164C YDL211CQ12121 372 aa3.32□□□□□ -1.88
CDC9YDL164C GEP5Q12393 293 aa3.32□□□□□ -1.88
CDC9YDL164C YML100W-AQ8TGT0 57 aa3.32□□□□□ -1.88
CDC9YDL164C PBI2P0CT04 75 aaKnown RBP3.31□□□□□ -1.88
CDC9YDL164C PTC1P35182 281 aa3.31□□□□□ -1.88
CDC9YDL164C SER2P42941 309 aa3.31□□□□□ -1.88
CDC9YDL164C BUD13P46947 266 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C HHT1P61830 136 aa3.31□□□□□ -1.88
CDC9YDL164C RPL22AP05749 121 aaKnown RBP3.31□□□□□ -1.88
CDC9YDL164C BUD23P25627 275 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C PAN3P36102 679 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C MRPL27P36526 146 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C YBR242WP38331 238 aa3.31□□□□□ -1.88
CDC9YDL164C PTH1P38876 190 aaKnown RBP3.31□□□□□ -1.88
CDC9YDL164C ASP1P38986 381 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C TEM1P38987 245 aa3.31□□□□□ -1.88
CDC9YDL164C YER181CP40097 107 aa3.31□□□□□ -1.88
CDC9YDL164C SCW4P53334 386 aaKnown RBP3.31□□□□□ -1.88
CDC9YDL164C FCF1Q05498 189 aaPredicted RBP3.31□□□□□ -1.88
CDC9YDL164C MEU1Q07938 337 aaKnown RBP RIP-Chip data3.31□□□□□ -1.88not detected
CDC9YDL164C HIS3P06633 220 aa3.3□□□□□ -1.88
CDC9YDL164C YBL010CP32788 280 aa3.3□□□□□ -1.88
CDC9YDL164C RPL14AP36105 138 aaKnown RBP3.3□□□□□ -1.88
CDC9YDL164C POP4P38336 279 aa3.3□□□□□ -1.88
CDC9YDL164C RPL14BP38754 138 aaKnown RBP3.3□□□□□ -1.88
CDC9YDL164C YHR140WP38842 239 aa3.3□□□□□ -1.88
CDC9YDL164C RRT13P40042 185 aa3.3□□□□□ -1.88
CDC9YDL164C IGD1P43598 195 aa3.3□□□□□ -1.88
CDC9YDL164C YGL118CP53132 145 aa3.3□□□□□ -1.88
CDC9YDL164C TVP15Q03860 143 aa3.3□□□□□ -1.88
CDC9YDL164C SPG3Q04398 127 aaPredicted RBP3.3□□□□□ -1.88
CDC9YDL164C YHL026CP38740 315 aa3.3□□□□□ -1.88
CDC9YDL164C SFT1P43682 97 aa3.3□□□□□ -1.88
CDC9YDL164C YOR020W-AQ3E824 90 aa3.3□□□□□ -1.88
CDC9YDL164C RSF2P46974 1380 aa3.29□□□□□ -1.88
CDC9YDL164C RPL9AP05738 191 aaKnown RBP3.29□□□□□ -1.88
CDC9YDL164C ATP5P09457 212 aa3.29□□□□□ -1.88
CDC9YDL164C SFC1P33303 322 aa3.29□□□□□ -1.88
CDC9YDL164C TIF34P40217 347 aaKnown RBP3.29□□□□□ -1.88
CDC9YDL164C PRE5P40302 234 aaKnown RBP3.29□□□□□ -1.88
CDC9YDL164C RPL9BP51401 191 aaKnown RBP3.29□□□□□ -1.88
CDC9YDL164C DML1Q03652 475 aa3.29□□□□□ -1.88
CDC9YDL164C YBR298C-AQ8TGK4 73 aa3.29□□□□□ -1.88
CDC9YDL164C YIL177CP40434 1758 aa3.28□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 103.9 ms