RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 COL19A1Q14993 1142 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 ZACNQ401N2 412 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 LRRC52Q8N7C0 313 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 EFHBQ8N7U6 833 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 FEZF2Q8TBJ5 459 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 SLC22A17Q8WUG5 538 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.09■□□□□ 0.175e-7■■□□□ 12.7
TRIM28-207ENST00000597136 DOCK8Q8NF50 2099 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-207ENST00000597136 GTPBP10A4D1E9 387 aaKnown RBP16.09■□□□□ 0.17
TRIM28-207ENST00000597136 SYN3O14994 580 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 P4HA2O15460 535 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 TBC1D4O60343 1298 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 PHACTR2O75167 634 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 OR1D2P34982 312 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 PBX1P40424 430 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 MXI1P50539 228 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 CLCN4P51793 760 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 CDR1P51861 262 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 MYL7Q01449 175 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 TFF2Q03403 129 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 PTPN21Q16825 1174 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 SV2CQ496J9 727 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 WSCD1Q658N2 575 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 KRT39Q6A163 491 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 PPP2R3CQ969Q6 453 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 ERGIC2Q96RQ1 377 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 EMILIN2Q9BXX0 1053 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 XYLT2Q9H1B5 865 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 FNIP2Q9P278 1114 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 MTRRQ9UBK8 725 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 SSX2IPQ9Y2D8 614 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 HCFC2Q9Y5Z7 792 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 TBX10O75333 385 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 PNPLA4P41247 253 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 GBP6Q6ZN66 633 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 ANKS3Q6ZW76 656 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 GPR65Q8IYL9 337 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 PABPC5Q96DU9 382 aaKnown RBP16.08■□□□□ 0.16
TRIM28-207ENST00000597136 ZNF560Q96MR9 790 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 CRACR2AQ9BSW2 395 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 GDAP2Q9NXN4 497 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 CLEC1BQ9P126 229 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 FBXL5Q9UKA1 691 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 BARX2Q9UMQ3 279 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-207ENST00000597136 L1RE1Q9UN81 338 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 COQ4Q9Y3A0 265 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 SNX9Q9Y5X1 595 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 CDY1Q9Y6F8 540 aa16.08■□□□□ 0.16
TRIM28-207ENST00000597136 VCANP13611 3396 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 A0A1W2PQC6 194 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 H3BQ06 376 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-207ENST00000597136 OAZ2O95190 189 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 HLA-DRAP01903 254 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 YWHAHQ04917 246 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-207ENST00000597136 KCNMA1Q12791 1236 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 CETN1Q12798 172 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 TRPC3Q13507 836 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 NCOA4Q13772 614 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 SYCP1Q15431 976 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 EXOC3L4Q17RC7 722 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 SOWAHAQ2M3V2 549 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 CTXN3Q4LDR2 81 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 OVOS1Q6IE37 1185 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 SPOPLQ6IQ16 392 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 LILRA6Q6PI73 481 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 VSTM4Q8IW00 320 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 APPL2Q8NEU8 664 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 TAS1R2Q8TE23 839 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 SEMA4DQ92854 862 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 TMEM209Q96SK2 561 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 CDCA3Q99618 268 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-207ENST00000597136 RTP3Q9BQQ7 232 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 PI4K2AQ9BTU6 479 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 UBE2ZQ9H832 354 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-207ENST00000597136 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.07■□□□□ 0.168e-8■□□□□ 8.8
TRIM28-207ENST00000597136 POLIQ9UNA4 740 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 SIK3Q9Y2K2 1263 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 R3HCC1Q9Y3T6 440 aaKnown RBP16.07■□□□□ 0.16
TRIM28-207ENST00000597136 BACE2Q9Y5Z0 518 aa16.07■□□□□ 0.16
TRIM28-207ENST00000597136 TGM5O43548 720 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 HCRTO43612 131 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 CYP11A1P05108 521 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 ADH1AP07327 375 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 OR4Q2P0C623 313 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 ODC1P11926 461 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 TYMPP19971 482 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 KCNA5P22460 613 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 PON1P27169 355 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 CDC25BP30305 580 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 NDUFV1P49821 464 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 ARPP19P56211 112 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 MYO1EQ12965 1108 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 CLUL1Q15846 466 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 WDR72Q3MJ13 1102 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 OSTM1Q86WC4 334 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 PDCL2Q8N4E4 241 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 C12orf76Q8N812 135 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-207ENST00000597136 FBXL13Q8NEE6 735 aa16.06■□□□□ 0.16
TRIM28-207ENST00000597136 LMO3Q8TAP4 145 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms