RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GPR15P49685 360 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 NLRP12P59046 1061 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 FKBP3Q00688 224 aaKnown RBP9.91□□□□□ -0.82
VPS35-206ENST00000565228 YWHAHQ04917 246 aaPredicted RBP9.91□□□□□ -0.82
VPS35-206ENST00000565228 LRRC63Q05C16 580 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 SURF1Q15526 300 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 ANKS3Q6ZW76 656 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 TRIML1Q8N9V2 468 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 ATAD1Q8NBU5 361 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 LMO3Q8TAP4 145 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 CACTINQ8WUQ7 758 aaKnown RBP9.91□□□□□ -0.82
VPS35-206ENST00000565228 TATDN2Q93075 761 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 TWNKQ96RR1 684 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 FNBP1Q96RU3 617 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 FUCA2Q9BTY2 467 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 RHOBTB2Q9BYZ6 727 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 ZCWPW1Q9H0M4 648 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 DNAJC25Q9H1X3 360 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 HSD3B7Q9H2F3 369 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 ADAM7Q9H2U9 754 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 MMRN2Q9H8L6 949 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS35-206ENST00000565228 SLC27A5Q9Y2P5 690 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 TRIOO75962 3097 aa9.91□□□□□ -0.82
VPS35-206ENST00000565228 OBSL1O75147 1896 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 CCDC195A0A1B0GUA6 201 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 MYBPHLA2RUH7 354 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 C19orf67A6NJJ6 358 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 CETN3O15182 167 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 CCL16O15467 120 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 TRAPPC3O43617 180 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 NCK2O43639 380 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 MOSPD3O75425 235 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 STAU1O95793 577 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 ASS1P00966 412 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 TNNC2P02585 160 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 C8AP07357 584 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ODC1P11926 461 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 SP100P23497 879 aaPredicted RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 CCR2P41597 374 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ASPAP45381 313 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 CACNA2D1P54289 1103 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 PSMC1P62191 440 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 APBA1Q02410 837 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ZP2Q05996 745 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 PAK1Q13153 545 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ORC1Q13415 861 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 NCOA4Q13772 614 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 SLC5A9Q2M3M2 681 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 SV2CQ496J9 727 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 TJAP1Q5JTD0 557 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ZNF280DQ6N043 979 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 DPY19L2P1Q6NXN4 242 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 FILIP1Q7Z7B0 1213 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 GPR149Q86SP6 731 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 HS6ST3Q8IZP7 471 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ZNF461Q8TAF7 563 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 SLC7A14Q8TBB6 771 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ADAMTS19Q8TE59 1207 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 WHAMMQ8TF30 809 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 KAT5Q92993 513 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 ARID3AQ99856 593 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 MKNK1Q9BUB5 465 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 SRRTQ9BXP5 876 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 LRRC3Q9BY71 257 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 VRTNQ9H8Y1 702 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 CEP72Q9P209 647 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 DNMT3BQ9UBC3 853 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 STK39Q9UEW8 545 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 HOOK1Q9UJC3 728 aaKnown RBP9.9□□□□□ -0.82
VPS35-206ENST00000565228 SSX2IPQ9Y2D8 614 aa9.9□□□□□ -0.82
VPS35-206ENST00000565228 DENND4CQ5VZ89 1909 aa9.9□□□□□ -0.83
VPS35-206ENST00000565228 ARHGEF37A1IGU5 675 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 PSMA7O14818 248 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 IKBKBO14920 756 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SLC16A3O15427 465 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 KIF20AO95235 890 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 CALCAP01258 141 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ATF2P15336 505 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ATF6P18850 670 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 WARSP23381 471 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 MARSP56192 900 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 ADCY1Q08828 1119 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 DUSP4Q13115 394 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 GPR17Q13304 367 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 BIRC3Q13489 604 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 NCAPHQ15003 741 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 WDR72Q3MJ13 1102 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SLC39A12Q504Y0 691 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 HSP90AA4PQ58FG1 418 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SDHAF4Q5VUM1 108 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 FAM171BQ6P995 826 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 FOXR2Q6PJQ5 311 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 SCARA5Q6ZMJ2 495 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 PAQR9Q6ZVX9 377 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 INTS8Q75QN2 995 aaKnown RBP9.89□□□□□ -0.83
VPS35-206ENST00000565228 PPFIBP1Q86W92 1011 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 TRIM59Q8IWR1 403 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 TCEAL8Q8IYN2 117 aa9.89□□□□□ -0.83
VPS35-206ENST00000565228 ADGRF2Q8IZF7 708 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms