RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 ATP1A3P13637 1013 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 P4HA1P13674 534 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 NRIP1P48552 1158 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 SCARA5Q6ZMJ2 495 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 RBM23Q86U06 439 aaKnown RBP23.23■■□□□ 1.31
SNX1-206ENST00000559389 OSTM1Q86WC4 334 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 ANKRD20A12PQ8NF67 263 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 OR10T2Q8NGX3 314 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 FAXDC2Q96IV6 333 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 OXCT2Q9BYC2 517 aaPredicted RBP23.23■■□□□ 1.31
SNX1-206ENST00000559389 BCO2Q9BYV7 579 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 SDCBP2Q9H190 292 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 GCNT4Q9P109 453 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 CDY1Q9Y6F8 540 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 CDH23Q9H251 3354 aa23.23■■□□□ 1.31
SNX1-206ENST00000559389 FSD2A1L4K1 749 aa23.22■■□□□ 1.31
SNX1-206ENST00000559389 OR6C75A6NL08 312 aa23.22■■□□□ 1.31
SNX1-206ENST00000559389 FAM163BP0C2L3 166 aa23.22■■□□□ 1.31
SNX1-206ENST00000559389 WARSP23381 471 aaKnown RBP23.22■■□□□ 1.31
SNX1-206ENST00000559389 GTF2F1P35269 517 aaKnown RBP eCLIP23.22■■□□□ 1.31
SNX1-206ENST00000559389 WDR44Q5JSH3 913 aa23.22■■□□□ 1.31
SNX1-206ENST00000559389 APTXQ7Z2E3 356 aaKnown RBP23.22■■□□□ 1.31
SNX1-206ENST00000559389 MRPL45Q9BRJ2 306 aaKnown RBP23.22■■□□□ 1.31
SNX1-206ENST00000559389 STXBP5LQ9Y2K9 1186 aa23.22■■□□□ 1.31
SNX1-206ENST00000559389 RAP1GAPP47736 663 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 COPB1P53618 953 aaKnown RBP23.21■■□□□ 1.31
SNX1-206ENST00000559389 COL19A1Q14993 1142 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 GLYCTKQ8IVS8 523 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 EFHBQ8N7U6 833 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 SLC22A17Q8WUG5 538 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 INTS2Q9H0H0 1204 aaKnown RBP23.21■■□□□ 1.31
SNX1-206ENST00000559389 DDX43Q9NXZ2 648 aaKnown RBP23.21■■□□□ 1.31
SNX1-206ENST00000559389 TRANK1O15050 2925 aa23.21■■□□□ 1.31
SNX1-206ENST00000559389 TPM2P07951 284 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 CDK11BP21127 795 aaKnown RBP23.2■■□□□ 1.3
SNX1-206ENST00000559389 KLRC2P26717 231 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 OR1D2P34982 312 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 LHX1P48742 406 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 CLCN4P51793 760 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 TPM4P67936 248 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 ROR1Q01973 937 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 KCNC3Q14003 757 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 RAB33AQ14088 237 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 GBP6Q6ZN66 633 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 PPFIBP1Q86W92 1011 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 THEM5Q8N1Q8 247 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 EHBP1Q8NDI1 1231 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 VN1R2Q8NFZ6 395 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 NT5C1BQ96P26 610 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 VPS16Q9H269 839 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 CYP3A43Q9HB55 503 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 NME7Q9Y5B8 376 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 HCFC2Q9Y5Z7 792 aa23.2■■□□□ 1.3
SNX1-206ENST00000559389 LRRC10BA6NIK2 292 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 LGALS16A8MUM7 142 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 GOLGA6L19H0YKK7 550 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 PES1O00541 588 aaKnown RBP23.19■■□□□ 1.3
SNX1-206ENST00000559389 HCRTO43612 131 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 GLP2RO95838 553 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 C1RP00736 705 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 TRIM65Q6PJ69 517 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 TATDN2Q93075 761 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 TMEM209Q96SK2 561 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 ARID3AQ99856 593 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 CRACR2AQ9BSW2 395 aa23.19■■□□□ 1.3
SNX1-206ENST00000559389 MYO7AQ13402 2215 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 WDR27A2RRH5 827 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 GLUD1P00367 558 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 CPB1P15086 417 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 PCSK1P29120 753 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 CDH8P55286 799 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 INCA1Q0VD86 236 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 LRMPQ12912 555 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 EXOC3L4Q17RC7 722 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 MAFAQ8NHW3 353 aaPredicted RBP23.18■■□□□ 1.3
SNX1-206ENST00000559389 ACBD6Q9BR61 282 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 ZCWPW1Q9H0M4 648 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 SNX25Q9H3E2 840 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 IGFLR1Q9H665 355 aa23.18■■□□□ 1.3
SNX1-206ENST00000559389 LINC01565O15544 149 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 TGM5O43548 720 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 NCK2O43639 380 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 OR4Q2P0C623 313 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 EPCAMP16422 314 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 TBXAS1P24557 533 aaPredicted RBP23.17■■□□□ 1.3
SNX1-206ENST00000559389 ACAT1P24752 427 aaKnown RBP23.17■■□□□ 1.3
SNX1-206ENST00000559389 RBM10P98175 930 aaKnown RBP23.17■■□□□ 1.3
SNX1-206ENST00000559389 CUL2Q13617 745 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 CCDC85BQ15834 202 aaPredicted RBP23.17■■□□□ 1.3
SNX1-206ENST00000559389 CTC1Q2NKJ3 1217 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 INTS6LQ5JSJ4 861 aaKnown RBP23.17■■□□□ 1.3
SNX1-206ENST00000559389 LILRA6Q6PI73 481 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 PALB2Q86YC2 1186 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 ARHGEF19Q8IW93 802 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 OR6B3Q8NGW1 331 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 PKMYT1Q99640 499 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 SYT15Q9BQS2 421 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 FBXW11Q9UKB1 542 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 CDH9Q9ULB4 789 aa23.17■■□□□ 1.3
SNX1-206ENST00000559389 SZT2Q5T011 3432 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms