RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MAGEC1O60732 1142 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PFKMP08237 780 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RALBP11234 206 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ITGA4P13612 1032 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 EPHB3P54753 998 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 EPHB1P54762 984 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SESN3P58005 492 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SCN4BQ8IWT1 228 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 NAF1Q96HR8 494 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 C11orf84Q9BUA3 381 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RSAD1Q9HA92 442 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RAVER2Q9HCJ3 691 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SCUBE2Q9NQ36 999 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RIC8BQ9NVN3 520 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ENOPH1Q9UHY7 261 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SNTNA6NMZ2 147 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ENC1O14682 589 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CDH16O75309 829 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SFR1Q86XK3 245 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 NUDCD3Q8IVD9 361 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 VPS37AQ8NEZ2 397 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 LRRC46Q96FV0 321 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CAMKK2Q96RR4 588 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PHACTR1Q9C0D0 580 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 DIABLOQ9NR28 239 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 TBC1D23Q9NUY8 699 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 A8MXQ7 604 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 HGSO14964 777 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PRKAR2AP13861 404 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RAB27AP51159 221 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 HNRNPH2P55795 449 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 FOXO4P98177 505 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PTK6Q13882 451 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 GIT2Q14161 759 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RBBP7Q16576 425 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SGSM1Q2NKQ1 1148 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 IZUMO3Q5VZ72 239 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 BTN2A1Q7KYR7 527 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 TBC1D10CQ8IV04 446 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CCNYQ8ND76 341 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SPDYE1Q8NFV5 336 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 GDAP1Q8TB36 358 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PGBD1Q96JS3 809 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 RBBP8Q99708 897 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CATSPERBQ9H7T0 1116 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 MAPRE3Q9UPY8 281 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SALL3Q9BXA9 1300 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 SYCE1LA8MT33 242 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ADM5C9JUS6 153 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 INPP4BO15327 924 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 EXTL3O43909 919 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 LSM8O95777 96 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ERBB2P04626 1255 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PDK2Q15119 407 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PKN1Q16512 942 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 HIF1AQ16665 826 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 IMPG1Q17R60 797 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 SV2CQ496J9 727 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 BROXQ5VW32 411 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF557Q8N988 423 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 HSPH1Q92598 858 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 FOPNLQ96NB1 174 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 RIT2Q99578 217 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 TMEM8AQ9HCN3 771 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 COL3A1P02461 1466 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF197O14709 1029 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CYP2C9P11712 490 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 MAGOHP61326 146 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CCZ1BP86790 482 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CCZ1P86791 482 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 HIBCHQ6NVY1 386 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 SRLQ86TD4 932 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 HORMAD1Q86X24 394 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 SPATA2LQ8IUW3 424 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 SIRT2Q8IXJ6 389 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PPIL6Q8IXY8 311 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ACTRT1Q8TDG2 376 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF558Q96NG5 402 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 BFARQ9NZS9 450 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ADAM30Q9UKF2 790 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CHMP2BQ9UQN3 213 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PCDHB11Q9Y5F2 797 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 TMEM131LA2VDJ0 1609 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 H0Y626 953 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CLDN3O15551 220 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PPP1R37O75864 691 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 TRIM16O95361 564 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 Q4G0T1 1027 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 KCTD16Q68DU8 428 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 C16orf86Q6ZW13 317 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 RHPN2Q8IUC4 686 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ELAC2Q9BQ52 826 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 BCO2Q9BYV7 579 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 OSBPL8Q9BZF1 889 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 POLR3FQ9H1D9 316 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 KLHL8Q9P2G9 620 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 GTPBP10A4D1E9 387 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 FAM47DPA6NHR8 397 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms