RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 RTP2Q5QGT7 225 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 VARS2Q5ST30 1063 aaKnown RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 ZNF697Q5TEC3 545 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 KLHDC7AQ5VTJ3 777 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 OVOS1Q6IE37 1185 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 LIMS2Q7Z4I7 341 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ARHGEF19Q8IW93 802 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ADGRF2Q8IZF7 708 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 THEM5Q8N1Q8 247 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 NEK11Q8NG66 645 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 GDPD5Q8WTR4 605 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 RIN2Q8WYP3 895 aaPredicted RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 TCF25Q9BQ70 676 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ZBP1Q9H171 429 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 SNX25Q9H3E2 840 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 CYP3A43Q9HB55 503 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 SIX2Q9NPC8 291 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 UBE2TQ9NPD8 197 aaPredicted RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 PLCB1Q9NQ66 1216 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 ENTPD7Q9NQZ7 604 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 MRPL17Q9NRX2 175 aaKnown RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 FAM207AQ9NSI2 230 aaPredicted RBP12.41□□□□□ -0.42
YBX3-213ENST00000542641 SSX2IPQ9Y2D8 614 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 SIK3Q9Y2K2 1263 aa12.41□□□□□ -0.42
YBX3-213ENST00000542641 SCN1AP35498 2009 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 KIAA1671Q9BY89 1806 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 A0A1W2PQC6 194 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 H7C4K7 107 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 AP5Z1O43299 807 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 TACC1O75410 805 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 OAZ2O95190 189 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 CTSAP10619 480 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 CD58P19256 250 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 GNL1P36915 607 aaPredicted RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 LHX1P48742 406 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 MFAP3P55082 362 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 DSG1Q02413 1049 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 GCNT1Q02742 428 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 CAMK1Q14012 370 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 KIAA0319Q5VV43 1072 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 PDXDC1Q6P996 788 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 GJB7Q6PEY0 223 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 ANKS3Q6ZW76 656 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 ENOSF1Q7L5Y1 443 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 OR6B3Q8NGW1 331 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 LNX1Q8TBB1 728 aaPredicted RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 SPATA18Q8TC71 538 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 KBTBD7Q8WVZ9 684 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 AUTS2Q8WXX7 1259 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 PIK3R5Q8WYR1 880 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 FAM81BQ96LP2 452 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 ARID3AQ99856 593 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 MRPL45Q9BRJ2 306 aaKnown RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 BCO2Q9BYV7 579 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 LMAN2LQ9H0V9 348 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 SDCBP2Q9H190 292 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 TTYH1Q9H313 450 aaPredicted RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 NGRNQ9NPE2 291 aaKnown RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 RYDENQ9NUL5 291 aaKnown RBP12.4□□□□□ -0.42
YBX3-213ENST00000542641 DNAJC12Q9UKB3 198 aa12.4□□□□□ -0.42
YBX3-213ENST00000542641 TRIOBPQ9H2D6 2365 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 A8MXQ7 604 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 GABRDO14764 452 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 LPXNO60711 386 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PDGFRBP09619 1106 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 UCHL3P15374 230 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 TRIM21P19474 475 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 WARSP23381 471 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 LMO2P25791 158 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 YWHAEP62258 255 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 MRPL58Q14197 206 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 SMC1AQ14683 1233 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 GRIN2CQ14957 1233 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PTPN14Q15678 1187 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PSMD5Q16401 504 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PTPROQ16827 1216 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 CTXN3Q4LDR2 81 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PLPP4Q5VZY2 271 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 IQCEQ6IPM2 695 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PDE12Q6L8Q7 609 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 ZNF280DQ6N043 979 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 DPY19L2P1Q6NXN4 242 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PRSS55Q6UWB4 352 aaPredicted RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 OSTM1Q86WC4 334 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 GPR65Q8IYL9 337 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 TTC39CQ8N584 583 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 PDCD7Q8N8D1 485 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 MRPL43Q8N983 215 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 KAT5Q92993 513 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 JAKMIP2Q96AA8 810 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 KREMEN1Q96MU8 473 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 OXCT2Q9BYC2 517 aaPredicted RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 PRDM12Q9H4Q4 367 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 CISHQ9NSE2 258 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 DDX43Q9NXZ2 648 aaKnown RBP12.39□□□□□ -0.43
YBX3-213ENST00000542641 CHD7Q9P2D1 2997 aa12.39□□□□□ -0.43
YBX3-213ENST00000542641 NLRC5Q86WI3 1866 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FSD2A1L4K1 749 aa12.38□□□□□ -0.43
YBX3-213ENST00000542641 FSCN2O14926 492 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms