RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 HIDE1A8MVS5 230 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 TBXAS1P24557 533 aaPredicted RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 PON1P27169 355 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 APBA1Q02410 837 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 CAMK1Q14012 370 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 SYCP1Q15431 976 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 KIAA0319Q5VV43 1072 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 RRAGAQ7L523 313 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 DPH6Q7L8W6 267 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 RBM23Q86U06 439 aaKnown RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 ARHGEF19Q8IW93 802 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 LMO3Q8TAP4 145 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 LNX1Q8TBB1 728 aaPredicted RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 MYLIPQ8WY64 445 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 NAP1L5Q96NT1 182 aaPredicted RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 ARID3AQ99856 593 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 SDCBP2Q9H190 292 aa16.01■□□□□ 0.15
NUP54-213ENST00000513352 UBE2TQ9NPD8 197 aaPredicted RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 RTN4Q9NQC3 1192 aaKnown RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.01■□□□□ 0.15
NUP54-213ENST00000513352 DDX43Q9NXZ2 648 aaKnown RBP16.01■□□□□ 0.15
NUP54-213ENST00000513352 A0A1B0GTH6 734 aa16■□□□□ 0.15
NUP54-213ENST00000513352 C2orf71A6NGG8 1288 aa16■□□□□ 0.15
NUP54-213ENST00000513352 A8MXQ7 604 aa16■□□□□ 0.15
NUP54-213ENST00000513352 TEX33O43247 280 aa16■□□□□ 0.15
NUP54-213ENST00000513352 CBFA2T2O43439 604 aa16■□□□□ 0.15
NUP54-213ENST00000513352 TPM3P06753 285 aa16■□□□□ 0.15
NUP54-213ENST00000513352 PDGFRBP09619 1106 aa16■□□□□ 0.15
NUP54-213ENST00000513352 CPB1P15086 417 aa16■□□□□ 0.15
NUP54-213ENST00000513352 WARSP23381 471 aaKnown RBP16■□□□□ 0.15
NUP54-213ENST00000513352 ACAT1P24752 427 aaKnown RBP16■□□□□ 0.15
NUP54-213ENST00000513352 KLRC2P26717 231 aa16■□□□□ 0.15
NUP54-213ENST00000513352 LHX1P48742 406 aa16■□□□□ 0.15
NUP54-213ENST00000513352 KLK7P49862 253 aa16■□□□□ 0.15
NUP54-213ENST00000513352 YWHAEP62258 255 aaKnown RBP16■□□□□ 0.15
NUP54-213ENST00000513352 CUL2Q13617 745 aa16■□□□□ 0.15
NUP54-213ENST00000513352 PTPN21Q16825 1174 aa16■□□□□ 0.15
NUP54-213ENST00000513352 GJB7Q6PEY0 223 aa16■□□□□ 0.15
NUP54-213ENST00000513352 ADGRD2Q7Z7M1 963 aa16■□□□□ 0.15
NUP54-213ENST00000513352 OSTM1Q86WC4 334 aa16■□□□□ 0.15
NUP54-213ENST00000513352 MRPL43Q8N983 215 aaKnown RBP16■□□□□ 0.15
NUP54-213ENST00000513352 KBTBD7Q8WVZ9 684 aa16■□□□□ 0.15
NUP54-213ENST00000513352 PPP2R3CQ969Q6 453 aa16■□□□□ 0.15
NUP54-213ENST00000513352 BCO2Q9BYV7 579 aa16■□□□□ 0.15
NUP54-213ENST00000513352 CYP3A43Q9HB55 503 aa16■□□□□ 0.15
NUP54-213ENST00000513352 FAM207AQ9NSI2 230 aaPredicted RBP16■□□□□ 0.15
NUP54-213ENST00000513352 MTRRQ9UBK8 725 aa16■□□□□ 0.15
NUP54-213ENST00000513352 APEX2Q9UBZ4 518 aa16■□□□□ 0.15
NUP54-213ENST00000513352 FBXL5Q9UKA1 691 aa16■□□□□ 0.15
NUP54-213ENST00000513352 CDY1Q9Y6F8 540 aa16■□□□□ 0.15
NUP54-213ENST00000513352 OR6C75A6NL08 312 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 TEX28O15482 410 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 HCRTO43612 131 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 TACC1O75410 805 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 OAZ2O95190 189 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 ADH1AP07327 375 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 CNPP09543 421 aaKnown RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 OR4Q2P0C623 313 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 PCSK1P29120 753 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 GNL1P36915 607 aaPredicted RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 NDUFV1P49821 464 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 MFAP3P55082 362 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 TSPY1Q01534 308 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 KCNMA1Q12791 1236 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 RAPGEF1Q13905 1077 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 ADGRE1Q14246 886 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 ARHGAP44Q17R89 818 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 NEK11Q8NG66 645 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 SPATA18Q8TC71 538 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 KAT5Q92993 513 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 CDX2Q99626 313 aaPredicted RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 XPO4Q9C0E2 1151 aaKnown RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 NSUN3Q9H649 340 aaKnown RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 IGFLR1Q9H665 355 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 TLE6Q9H808 572 aa15.99■□□□□ 0.15
NUP54-213ENST00000513352 PRRC2BQ5JSZ5 2229 aaKnown RBP15.99■□□□□ 0.15
NUP54-213ENST00000513352 PER2O15055 1255 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 ADAM12O43184 909 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 KRT5P13647 590 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 FOSL2P15408 326 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 TRIM21P19474 475 aaKnown RBP15.98■□□□□ 0.15
NUP54-213ENST00000513352 OR1D2P34982 312 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 NRIP1P48552 1158 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 CDR1P51861 262 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 NDST1P52848 882 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 PSMC1P62191 440 aaKnown RBP15.98■□□□□ 0.15
NUP54-213ENST00000513352 ORC1Q13415 861 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 MRPL58Q14197 206 aaKnown RBP15.98■□□□□ 0.15
NUP54-213ENST00000513352 ZNF394Q53GI3 561 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 TCEAL5Q5H9L2 206 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 PHLDB3Q6NSJ2 640 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 LIMS2Q7Z4I7 341 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 PALB2Q86YC2 1186 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 GPR65Q8IYL9 337 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 FAXDC2Q96IV6 333 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 KLHL5Q96PQ7 755 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 TMEM209Q96SK2 561 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 SYT15Q9BQS2 421 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 TRIM5Q9C035 493 aa15.98■□□□□ 0.15
NUP54-213ENST00000513352 DNAI2Q9GZS0 605 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms