RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YKL102CP34249 101 aa1.42□□□□□ -2.18
UBP11YKR098C PAN3P36102 679 aaPredicted RBP1.42□□□□□ -2.18
UBP11YKR098C EFM5P53200 248 aaKnown RBP1.42□□□□□ -2.18
UBP11YKR098C HPT1Q04178 221 aaKnown RBP1.42□□□□□ -2.18
UBP11YKR098C DYN3Q04949 312 aa1.42□□□□□ -2.18
UBP11YKR098C YOL014WQ08110 124 aa1.42□□□□□ -2.18
UBP11YKR098C PDR18P53756 1333 aa1.42□□□□□ -2.18
UBP11YKR098C YAR023CD6VPM8 179 aa1.41□□□□□ -2.18
UBP11YKR098C QCR2P07257 368 aa1.41□□□□□ -2.18
UBP11YKR098C SEC14P24280 304 aaKnown RBP1.41□□□□□ -2.18
UBP11YKR098C TVP38P36164 337 aa1.41□□□□□ -2.18
UBP11YKR098C FCY21P40039 528 aa1.41□□□□□ -2.18
UBP11YKR098C VTC1P40046 129 aaRIP-Chip data1.41□□□□□ -2.18not detected
UBP11YKR098C YER134CP40081 178 aa1.41□□□□□ -2.18
UBP11YKR098C MPC3P53311 146 aa1.41□□□□□ -2.18
UBP11YKR098C NUP49Q02199 472 aa1.41□□□□□ -2.18
UBP11YKR098C NAT3Q06504 195 aa1.41□□□□□ -2.18
UBP11YKR098C PEX11Q12462 236 aa1.41□□□□□ -2.18
UBP11YKR098C YPR014CQ6B0W2 109 aa1.41□□□□□ -2.18
UBP11YKR098C POR1P04840 283 aaKnown RBP1.41□□□□□ -2.18
UBP11YKR098C DDI2P0CH63 225 aa1.41□□□□□ -2.18
UBP11YKR098C DDI3P0CH64 225 aa1.41□□□□□ -2.18
UBP11YKR098C SHE2P36068 246 aaKnown RBP RIP-Chip data1.41□□□□□ -2.18not detected
UBP11YKR098C YHR022CP38763 256 aa1.41□□□□□ -2.18
UBP11YKR098C SVP26P38869 228 aa1.41□□□□□ -2.18
UBP11YKR098C YNL217WP40152 326 aa1.41□□□□□ -2.18
UBP11YKR098C YFL019CP43576 117 aa1.41□□□□□ -2.18
UBP11YKR098C GPI14P47088 403 aaKnown RBP1.41□□□□□ -2.18
UBP11YKR098C CYT2Q00873 224 aa1.41□□□□□ -2.18
UBP11YKR098C UBC6P33296 250 aaPredicted RBP1.4□□□□□ -2.19
UBP11YKR098C AVT2P39981 480 aa1.4□□□□□ -2.19
UBP11YKR098C TMA22P47089 198 aaPredicted RBP1.4□□□□□ -2.19
UBP11YKR098C NSG1P38837 291 aa1.4□□□□□ -2.19
UBP11YKR098C MTW1P39731 289 aa1.4□□□□□ -2.19
UBP11YKR098C RFC2P40348 353 aa1.4□□□□□ -2.19
UBP11YKR098C AGE2P40529 298 aa1.4□□□□□ -2.19
UBP11YKR098C ERG25P53045 309 aa1.4□□□□□ -2.19
UBP11YKR098C HSK3P69852 69 aa1.4□□□□□ -2.19
UBP11YKR098C YMR099CQ03161 297 aaKnown RBP1.4□□□□□ -2.19
UBP11YKR098C RDI1Q12434 202 aa1.4□□□□□ -2.19
UBP11YKR098C ATG40Q99325 256 aa1.4□□□□□ -2.19
UBP11YKR098C CMD1P06787 147 aaKnown RBP1.39□□□□□ -2.19
UBP11YKR098C SPO13P23624 291 aa1.39□□□□□ -2.19
UBP11YKR098C NRG2P38082 220 aa1.39□□□□□ -2.19
UBP11YKR098C SOL1P50278 321 aa1.39□□□□□ -2.19
UBP11YKR098C PLP1Q04004 230 aa1.39□□□□□ -2.19
UBP11YKR098C YOR342CQ12182 319 aa1.39□□□□□ -2.19
UBP11YKR098C DGK1Q12382 290 aa1.39□□□□□ -2.19
UBP11YKR098C YLR236CA0A023PZG4 107 aa1.38□□□□□ -2.19
UBP11YKR098C DSE2P38844 325 aa1.38□□□□□ -2.19
UBP11YKR098C GAA1P39012 614 aa1.38□□□□□ -2.19
UBP11YKR098C YFR054CP43622 192 aa1.38□□□□□ -2.19
UBP11YKR098C YGL235WP53071 178 aa1.38□□□□□ -2.19
UBP11YKR098C YLR412C-AQ3E742 68 aa1.38□□□□□ -2.19
UBP11YKR098C YHR086W-AQ3E746 53 aa1.38□□□□□ -2.19
UBP11YKR098C TIR1P10863 254 aa1.38□□□□□ -2.19
UBP11YKR098C FZF1P32805 299 aa1.38□□□□□ -2.19
UBP11YKR098C EDC3P39998 551 aaKnown RBP1.38□□□□□ -2.19
UBP11YKR098C VPS71Q03433 280 aa1.38□□□□□ -2.19
UBP11YKR098C YLR053CQ12026 108 aa1.38□□□□□ -2.19
UBP11YKR098C YBR209WP38311 105 aa1.37□□□□□ -2.19
UBP11YKR098C YFH7P43591 353 aa1.37□□□□□ -2.19
UBP11YKR098C ERJ5P43613 295 aaPredicted RBP1.37□□□□□ -2.19
UBP11YKR098C TTI2P47168 421 aa1.37□□□□□ -2.19
UBP11YKR098C YMR295CQ03559 197 aa1.37□□□□□ -2.19
UBP11YKR098C SML1Q04964 104 aa1.37□□□□□ -2.19
UBP11YKR098C NSL1Q12143 216 aa1.37□□□□□ -2.19
UBP11YKR098C YDL180WQ12301 547 aa1.37□□□□□ -2.19
UBP11YKR098C FIG1P38224 298 aa1.37□□□□□ -2.19
UBP11YKR098C VMA22P38784 181 aa1.37□□□□□ -2.19
UBP11YKR098C POP3P53833 195 aaPredicted RBP1.37□□□□□ -2.19
UBP11YKR098C SHH3Q04487 196 aa1.37□□□□□ -2.19
UBP11YKR098C RPS28BP0C0X0 67 aaKnown RBP1.36□□□□□ -2.19
UBP11YKR098C NSP1P14907 823 aaKnown RBP1.36□□□□□ -2.19
UBP11YKR098C IDP1P21954 428 aaKnown RBP1.36□□□□□ -2.19
UBP11YKR098C YCR023CP25351 611 aa1.36□□□□□ -2.19
UBP11YKR098C CPR5P35176 225 aa1.36□□□□□ -2.19
UBP11YKR098C CSH1P38287 376 aa1.36□□□□□ -2.19
UBP11YKR098C DER1P38307 211 aa1.36□□□□□ -2.19
UBP11YKR098C TVP23P38962 199 aa1.36□□□□□ -2.19
UBP11YKR098C YNL200CP40165 246 aaKnown RBP1.36□□□□□ -2.19
UBP11YKR098C AYR1P40471 297 aa1.36□□□□□ -2.19
UBP11YKR098C KNH1P50112 268 aa1.36□□□□□ -2.19
UBP11YKR098C MPA43P53583 542 aaPredicted RBP1.36□□□□□ -2.19
UBP11YKR098C FYV12Q08559 129 aa1.36□□□□□ -2.19
UBP11YKR098C DAS2Q12084 232 aa1.36□□□□□ -2.19
UBP11YKR098C BOL1Q3E793 110 aa1.36□□□□□ -2.19
UBP11YKR098C RPS28AQ3E7X9 67 aaPredicted RBP1.36□□□□□ -2.19
UBP11YKR098C PHO85P17157 305 aa1.35□□□□□ -2.19
UBP11YKR098C MDH2P22133 377 aa1.35□□□□□ -2.19
UBP11YKR098C FYV4P38783 130 aaPredicted RBP1.35□□□□□ -2.19
UBP11YKR098C SPC25P40014 221 aa1.35□□□□□ -2.19
UBP11YKR098C CUP9P41817 306 aa1.35□□□□□ -2.19
UBP11YKR098C IGO1P53897 168 aa1.35□□□□□ -2.19
UBP11YKR098C DIG2Q03373 323 aaKnown RBP1.35□□□□□ -2.19
UBP11YKR098C CUE4Q04201 117 aaPredicted RBP1.35□□□□□ -2.19
UBP11YKR098C IRC23Q08416 157 aa1.35□□□□□ -2.19
UBP11YKR098C RAD28Q12021 506 aa1.35□□□□□ -2.19
UBP11YKR098C ATP20Q12233 115 aa1.35□□□□□ -2.19
UBP11YKR098C SEC11P15367 167 aa1.35□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 57.9 ms