RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	TIM9	O74700	87 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	RPC19	P28000	142 aa	Known RBP	3.2	□□□□□ -1.9
VMA22	YHR060W	MID2	P36027	376 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	PHB1	P40961	287 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	SNX4	P47057	423 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	TTI2	P47168	421 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	AIF1	P52923	378 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	THI74	Q04083	370 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	SPG3	Q04398	127 aa	Predicted RBP	3.2	□□□□□ -1.9
VMA22	YHR060W	DGK1	Q12382	290 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	ODC2	Q99297	307 aa		3.2	□□□□□ -1.9
VMA22	YHR060W	MSW1	P04803	379 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	RPL2A	P0CX45	254 aa	Known RBP	3.19	□□□□□ -1.9
VMA22	YHR060W	RPL2B	P0CX46	254 aa	Known RBP	3.19	□□□□□ -1.9
VMA22	YHR060W	NHP6A	P11632	93 aa	Known RBP	3.19	□□□□□ -1.9
VMA22	YHR060W	ATP15	P21306	62 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	STP22	P25604	385 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	FCY21	P40039	528 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	YPD1	Q07688	167 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	YOL014W	Q08110	124 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	IES4	Q08561	116 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	ATP14	Q12349	124 aa		3.19	□□□□□ -1.9
VMA22	YHR060W	SNC2	P33328	115 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
VMA22	YHR060W	PAN3	P36102	679 aa	Predicted RBP	3.18	□□□□□ -1.9
VMA22	YHR060W	MRPL17	P36528	281 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	OPY1	P38271	328 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	GVP36	P40531	326 aa	Known RBP	3.18	□□□□□ -1.9
VMA22	YHR060W	GLR1	P41921	483 aa	Known RBP	3.18	□□□□□ -1.9
VMA22	YHR060W	YJR015W	P47090	510 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	CCC1	P47818	322 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	VPS71	Q03433	280 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	DAS2	Q12084	232 aa		3.18	□□□□□ -1.9
VMA22	YHR060W	PST2	Q12335	198 aa	Known RBP	3.18	□□□□□ -1.9
VMA22	YHR060W	YHR032W-A	P0C5N6	59 aa		3.17	□□□□□ -1.9
VMA22	YHR060W	SEN2	P16658	377 aa		3.17	□□□□□ -1.9
VMA22	YHR060W	SUA7	P29055	345 aa	Predicted RBP	3.17	□□□□□ -1.9
VMA22	YHR060W	YIL059C	P40520	121 aa		3.17	□□□□□ -1.9
VMA22	YHR060W	YOR268C	Q08734	132 aa		3.17	□□□□□ -1.9
VMA22	YHR060W	YAR023C	D6VPM8	179 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	RPL30	P14120	105 aa	Known RBP	3.16	□□□□□ -1.9
VMA22	YHR060W	UMP1	P38293	148 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	YBR285W	P38354	144 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	PGD1	P40356	397 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	YDR274C	P87283	123 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	YDR366C	P87287	132 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	DYN2	Q02647	92 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	MRPS8	Q03799	155 aa		3.16	□□□□□ -1.9
VMA22	YHR060W	SCM4	P32564	187 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	YPL073C	P40323	161 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	YFL019C	P43576	117 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	UBC7	Q02159	165 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	GRX5	Q02784	150 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	YOR214C	Q12282	236 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	YLR361C-A	Q3E795	98 aa		3.15	□□□□□ -1.91
VMA22	YHR060W	ECM5	Q03214	1411 aa		3.14	□□□□□ -1.91
VMA22	YHR060W	VMA10	P48836	114 aa	Known RBP	3.14	□□□□□ -1.91
VMA22	YHR060W	SOL1	P50278	321 aa		3.14	□□□□□ -1.91
VMA22	YHR060W	ORM1	P53224	222 aa		3.14	□□□□□ -1.91
VMA22	YHR060W	HHO1	P53551	258 aa		3.14	□□□□□ -1.91
VMA22	YHR060W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	RIP-Chip
VMA22	YHR060W	YMR295C	Q03559	197 aa		3.14	□□□□□ -1.91
VMA22	YHR060W	ATP5	P09457	212 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	SCL1	P21243	252 aa	Known RBP	3.13	□□□□□ -1.91
VMA22	YHR060W	SFK1	P35735	353 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	YHL026C	P38740	315 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	YFR054C	P43622	192 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	VPS28	Q02767	242 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	COF1	Q03048	143 aa	Known RBP	3.13	□□□□□ -1.91
VMA22	YHR060W	YDR391C	Q04170	232 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	NEJ1	Q06148	342 aa		3.13	□□□□□ -1.91
VMA22	YHR060W	NSP1	P14907	823 aa	Known RBP	3.12	□□□□□ -1.91
VMA22	YHR060W	RSA4	P25382	515 aa	Known RBP	3.12	□□□□□ -1.91
VMA22	YHR060W	YET1	P35723	206 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	CTR2	P38865	189 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	VTC1	P40046	129 aa	RIP-Chip data	3.12	□□□□□ -1.91	not detected
VMA22	YHR060W	NSA2	P40078	261 aa	Known RBP	3.12	□□□□□ -1.91
VMA22	YHR060W	YGR039W	P53225	103 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	YMR099C	Q03161	297 aa	Known RBP	3.12	□□□□□ -1.91
VMA22	YHR060W	SPC24	Q04477	213 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	SHH3	Q04487	196 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	NAT3	Q06504	195 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	RFU1	Q08003	200 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	HRD1	Q08109	551 aa		3.12	□□□□□ -1.91
VMA22	YHR060W	YIL177C	P40434	1758 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	YJL225C	P40889	1758 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	CSH1	P38287	376 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	PRS3	P38689	320 aa	Known RBP	3.11	□□□□□ -1.91
VMA22	YHR060W	CUP9	P41817	306 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	ERJ5	P43613	295 aa	Predicted RBP	3.11	□□□□□ -1.91
VMA22	YHR060W	YGR219W	P53307	113 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	YKR005C	Q02203	525 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	YDR278C	Q05612	105 aa		3.11	□□□□□ -1.91
VMA22	YHR060W	POR1	P04840	283 aa	Known RBP	3.1	□□□□□ -1.91
VMA22	YHR060W	PTC1	P35182	281 aa		3.1	□□□□□ -1.91
VMA22	YHR060W	SMD3	P43321	101 aa	Known RBP	3.1	□□□□□ -1.91
VMA22	YHR060W	DIG2	Q03373	323 aa	Known RBP	3.1	□□□□□ -1.91
VMA22	YHR060W	YMR320W	Q04897	101 aa		3.1	□□□□□ -1.91
VMA22	YHR060W	FEX1	Q08913	375 aa		3.1	□□□□□ -1.91
VMA22	YHR060W	FEX2	Q08991	375 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms