RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF132P52740 706 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 BPIFB4P59827 614 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 BMS1Q14692 1282 aaKnown RBP32.69■■■□□ 2.82
CTCF-203ENST00000566078 OLIG1Q8TAK6 271 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 LNX1Q8TBB1 728 aaPredicted RBP32.69■■■□□ 2.82
CTCF-203ENST00000566078 VWCEQ96DN2 955 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 SEPT11Q9NVA2 429 aaKnown RBP32.69■■■□□ 2.82
CTCF-203ENST00000566078 SPTLC1O15269 473 aa32.68■■■□□ 2.82
CTCF-203ENST00000566078 IKBKEQ14164 716 aa32.68■■■□□ 2.82
CTCF-203ENST00000566078 NOMO2Q5JPE7 1267 aa32.68■■■□□ 2.82
CTCF-203ENST00000566078 TAF3Q5VWG9 929 aa32.68■■■□□ 2.82
CTCF-203ENST00000566078 GLYCTKQ8IVS8 523 aa32.68■■■□□ 2.82
CTCF-203ENST00000566078 KPNA7A9QM74 516 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 DDX3XO00571 662 aaKnown RBP eCLIP32.67■■■□□ 2.826e-7■■□□□ 14
CTCF-203ENST00000566078 CSF2RAP15509 400 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 TNFAIP3P21580 790 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 TUSC3Q13454 348 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 MFSD5Q6N075 450 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 REXO1L1PQ8IX06 675 aa32.67■■■□□ 2.82
CTCF-203ENST00000566078 RPUSD2Q8IZ73 545 aaKnown RBP32.67■■■□□ 2.82
CTCF-203ENST00000566078 RPL9P32969 192 aaKnown RBP32.66■■■□□ 2.82
CTCF-203ENST00000566078 LILRA4P59901 499 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 ZNF394Q53GI3 561 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 SMYD5Q6GMV2 418 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 ABI1Q8IZP0 508 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 TMEM199Q8N511 208 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 PTPRSQ13332 1948 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 GNA15P30679 374 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 KIAA1328Q86T90 577 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 PAAF1Q9BRP4 392 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 GDAP2Q9NXN4 497 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 PCDH10Q9P2E7 1040 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 PCDHA13Q9Y5I0 950 aa32.66■■■□□ 2.82
CTCF-203ENST00000566078 A0A0U1RQJ8 604 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 CILPO75339 1184 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 CHRNB2P17787 502 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 CDR2Q01850 454 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 UPP1Q16831 310 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 NPAS4Q8IUM7 802 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 SLC30A5Q8TAD4 765 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 ATRIPQ8WXE1 791 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 DDX1Q92499 740 aaKnown RBP32.65■■■□□ 2.82
CTCF-203ENST00000566078 RABGGTAQ92696 567 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 UROC1Q96N76 676 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 FAM124BQ9H5Z6 455 aaPredicted RBP32.65■■■□□ 2.82
CTCF-203ENST00000566078 RNF216Q9NWF9 866 aaPredicted RBP32.65■■■□□ 2.82
CTCF-203ENST00000566078 HMGXB4Q9UGU5 601 aa32.65■■■□□ 2.82
CTCF-203ENST00000566078 MMEP08473 750 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 INCA1Q0VD86 236 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 LIN28BQ6ZN17 250 aaKnown RBP eCLIP32.64■■■□□ 2.82
CTCF-203ENST00000566078 TTC39CQ8N584 583 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 TBC1D13Q9NVG8 400 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 KANSL3Q9P2N6 904 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 NAGPAQ9UK23 515 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 NENFQ9UMX5 172 aa32.64■■■□□ 2.82
CTCF-203ENST00000566078 HOXA2O43364 376 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 MAGEA1P43355 309 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 GATMP50440 423 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 FMO1Q01740 532 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 ZNF677Q86XU0 584 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 CRIPAKQ8N1N5 446 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 C3orf58Q8NDZ4 430 aa32.63■■■□□ 2.81
CTCF-203ENST00000566078 DDX27Q96GQ7 796 aaKnown RBP32.63■■■□□ 2.81
CTCF-203ENST00000566078 MRPL45Q9BRJ2 306 aaKnown RBP32.63■■■□□ 2.81
CTCF-203ENST00000566078 PUF60Q9UHX1 559 aaKnown RBP32.63■■■□□ 2.81
CTCF-203ENST00000566078 GOLGA6L9A6NEM1 432 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 IGFBP6P24592 240 aaPredicted RBP32.62■■■□□ 2.81
CTCF-203ENST00000566078 VAV2P52735 878 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 RNASELQ05823 741 aaKnown RBP32.62■■■□□ 2.81
CTCF-203ENST00000566078 CCDC122Q5T0U0 273 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 PALB2Q86YC2 1186 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 LUC7LQ9NQ29 371 aaKnown RBP32.62■■■□□ 2.81
CTCF-203ENST00000566078 PRKAG2Q9UGJ0 569 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 BARX2Q9UMQ3 279 aaPredicted RBP32.62■■■□□ 2.81
CTCF-203ENST00000566078 THAP12O43422 761 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 ORC1Q13415 861 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 SOWAHAQ2M3V2 549 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 ALKBH5Q6P6C2 394 aaKnown RBP32.62■■■□□ 2.81
CTCF-203ENST00000566078 ZNF280BQ86YH2 543 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 WHAMMQ8TF30 809 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 TWNKQ96RR1 684 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 ELOVL4Q9GZR5 314 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 LZTFL1Q9NQ48 299 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 TFR2Q9UP52 801 aa32.62■■■□□ 2.81
CTCF-203ENST00000566078 HUS1O60921 280 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 DDHD2O94830 711 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 NDST1P52848 882 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 RAD23BP54727 409 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 APPL2Q8NEU8 664 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 CASD1Q96PB1 797 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 L1RE1Q9UN81 338 aa32.61■■■□□ 2.81
CTCF-203ENST00000566078 B4GALT3O60512 393 aa32.6■■■□□ 2.81
CTCF-203ENST00000566078 PFKMP08237 780 aa32.6■■■□□ 2.81
CTCF-203ENST00000566078 DSC1Q08554 894 aa32.6■■■□□ 2.81
CTCF-203ENST00000566078 FAM193BQ96PV7 902 aaPredicted RBP32.6■■■□□ 2.81
CTCF-203ENST00000566078 PCDHB18PQ96TA0 734 aa32.6■■■□□ 2.81
CTCF-203ENST00000566078 ABHD14A-ACY1A0A1B0GW23 586 aa32.59■■■□□ 2.81
CTCF-203ENST00000566078 RCCD1A6NED2 376 aa32.59■■■□□ 2.81
CTCF-203ENST00000566078 PAEPP09466 180 aa32.59■■■□□ 2.81
CTCF-203ENST00000566078 BRD2P25440 801 aaKnown RBP32.59■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms