RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF560Q96MR9 790 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 APOL6Q9BWW8 343 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 CISHQ9NSE2 258 aa19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 NXF1Q9UBU9 619 aaKnown RBP19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 PDCD11Q14690 1871 aaKnown RBP19.42■□□□□ 0.7
CCDC88C-203ENST00000389856 GRID2IPA4D2P6 1211 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 ARVCFO00192 962 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 NOP2P46087 812 aaKnown RBP19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 FMO1Q01740 532 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 XKR4Q5GH76 650 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 TAF3Q5VWG9 929 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 ALKAL1Q6UXT8 129 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 UBR7Q8N806 425 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 SH3TC2Q8TF17 1288 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 RFFLQ8WZ73 363 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 CAPZA3Q96KX2 299 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 BCO2Q9BYV7 579 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 PRDM10Q9NQV6 1147 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 TRMT13Q9NUP7 481 aaKnown RBP19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 SLC38A7Q9NVC3 462 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 NCANO14594 1321 aa19.41■□□□□ 0.7
CCDC88C-203ENST00000389856 MEFVO15553 781 aaPredicted RBP19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 MED7O43513 233 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 SRGAP2O75044 1071 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 ITGA4P13612 1032 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 CHRNB2P17787 502 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 ASPAP45381 313 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 ZNF132P52740 706 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 CCDC181Q5TID7 509 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 TRAIPQ9BWF2 469 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 PACSIN1Q9BY11 444 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 ERVK-5Q9HDB9 667 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 FAM105AQ9NUU6 356 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 UMODL1Q5DID0 1318 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 TMCO5BA8MYB1 307 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 FTLP02792 175 aaPredicted RBP19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 MMEP08473 750 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 PAEPP09466 180 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 MYBL1P10243 752 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 GPC5P78333 572 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 ZBTB6Q15916 424 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 TRIM71Q2Q1W2 868 aaKnown RBP19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 DDX1Q92499 740 aaKnown RBP19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 WNT8BQ93098 351 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 PGBD4Q96DM1 585 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 RPS6KC1Q96S38 1066 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 UNC93B1Q9H1C4 597 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 UBN1Q9NPG3 1134 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 PAK6Q9NQU5 681 aaPredicted RBP19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 WBP1LQ9NX94 342 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 HES2Q9Y543 173 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 CEP83Q9Y592 693 aa19.4■□□□□ 0.7
CCDC88C-203ENST00000389856 THAP12O43422 761 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 LSM8O95777 96 aaKnown RBP19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 TFRCP02786 760 aaKnown RBP19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 CD58P19256 250 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 AKAP5P24588 427 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 TCEAL1Q15170 157 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 CLEC16AQ2KHT3 1053 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 CFAP221Q4G0U5 840 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 ACAD10Q6JQN1 1059 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 OLIG1Q8TAK6 271 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 CXorf38Q8TB03 319 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 TLR10Q9BXR5 811 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 MED4Q9NPJ6 270 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 PADI3Q9ULW8 664 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 GIT1Q9Y2X7 761 aa19.39■□□□□ 0.69
CCDC88C-203ENST00000389856 SMIM28A0A1B0GU29 152 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 PDE2AO00408 941 aaPredicted RBP19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 BUB1O43683 1085 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 OAS2P29728 719 aaKnown RBP19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 NSFP46459 744 aaKnown RBP19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 BFSP2Q13515 415 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 CASP8Q14790 479 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 SCARA5Q6ZMJ2 495 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 SMG8Q8ND04 991 aaKnown RBP19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 SPATA4Q8NEY3 305 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 ELMO3Q96BJ8 720 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 KIAA1257Q9ULG3 409 aa19.38■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF623O75123 536 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 WEE2P0C1S8 567 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 GHRP10912 638 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 ABCB4P21439 1286 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 TNFRSF8P28908 595 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 CD52P31358 61 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 LPIN1Q14693 890 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 MEI1Q5TIA1 1274 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF518BQ9C0D4 1074 aa19.37■□□□□ 0.69
CCDC88C-203ENST00000389856 TRIP11Q15643 1979 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF185O15231 689 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CKBP12277 381 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CCL5P13501 91 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 HADHBP55084 474 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 SV2CQ496J9 727 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF618Q5T7W0 954 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 LIN9Q5TKA1 542 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CCNI2Q6ZMN8 369 aaPredicted RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 MRPL10Q7Z7H8 261 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 VCPIP1Q96JH7 1222 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 ZMAT2Q96NC0 199 aaKnown RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms