RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 F5H423 210 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 RRP9O43818 475 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 GFPT2O94808 682 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 CSF1RP07333 972 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 WASP42768 502 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 LMNB2Q03252 620 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PNOCQ13519 176 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 WDR45BQ5MNZ6 344 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ZNF410Q86VK4 478 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 TMA16Q96EY4 203 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 GPSM3Q9Y4H4 160 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 SUN1O94901 812 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 RASA1P20936 1047 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CDC25AP30304 524 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 LIFRP42702 1097 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 VAMP7P51809 220 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 LPAL2Q16609 132 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 SGSM1Q2NKQ1 1148 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 TRIM67Q6ZTA4 783 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 OTOP1Q7RTM1 612 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CEP120Q8N960 986 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 USP33Q8TEY7 942 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 EHD4Q9H223 541 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PRDM12Q9H4Q4 367 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PCDHB3Q9Y5E6 796 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 LRRC72A6NJI9 287 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 H2AFZP0C0S5 128 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PDHBP11177 359 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 HPGDP15428 266 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 DCAF6Q58WW2 860 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 H2AFVQ71UI9 128 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 STAG2Q8N3U4 1231 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 ACDQ96AP0 544 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 RIT2Q99578 217 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PTPN22Q9Y2R2 807 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PCDHA5Q9Y5H7 936 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CCDC151A5D8V7 595 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CBX4O00257 560 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PODXLO00592 558 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 NFIBO00712 420 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 TRIM66O15016 1216 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CXCR2P25025 360 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 GABRR2P28476 465 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 ACLYP53396 1101 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 SKP1P63208 163 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 RESTQ13127 1097 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 GOLGA7BQ2TAP0 167 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 RETSATQ6NUM9 610 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 LNPEPQ9UIQ6 1025 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 ERICH4A6NGS2 130 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CSDE1O75534 798 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 SGPL1O95470 568 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 ITGAXP20702 1163 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 STX1BP61266 288 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 FKBP3Q00688 224 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PTRHD1Q6GMV3 140 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CATSPER3Q86XQ3 398 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 KRT82Q9NSB4 513 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PCSK1NQ9UHG2 260 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 GSG1L2A8MUP6 293 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 FOXN1O15353 648 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 RHOBTB1O94844 696 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 TDP2O95551 362 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 ATF2P15336 505 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CAPN2P17655 700 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 PTPN2P17706 415 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 NUMBP49757 651 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 SCNN1GP51170 649 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 XRCC4Q13426 336 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 TBC1D25Q3MII6 688 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 KCTD17Q8N5Z5 321 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 HMGB4Q8WW32 186 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 SPIRE2Q8WWL2 714 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 HERVK_113Q902F9 699 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 CXorf40BQ96DE9 158 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 FAM114A2Q9NRY5 505 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 NRKQ7Z2Y5 1582 aa9.69□□□□□ -0.86
LIMCH1-202ENST00000381753 MMP1P03956 469 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 SLC10A3P09131 477 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 RFX3P48380 749 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 MDH1BQ5I0G3 518 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 SLC27A1Q6PCB7 646 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 DTNBP1Q96EV8 351 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 TRMT61BQ9BVS5 477 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 UBXN6Q9BZV1 441 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 DDX43Q9NXZ2 648 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 DEC1Q9P2X7 70 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 CSH1P0DML2 217 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 CSH2P0DML3 217 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 IFNAR1P17181 557 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 GDI1P31150 447 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 NR5A1Q13285 461 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 CAMK2GQ13555 558 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 ZNF589Q86UQ0 364 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 MAFAQ8NHW3 353 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 EEF2KMTQ96G04 330 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 RUBCNLQ9H714 662 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 CCDC78A2IDD5 438 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 LRRC53A6NM62 1247 aa9.68□□□□□ -0.86
LIMCH1-202ENST00000381753 RHPN2P1A8MT19 583 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms