RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YNL208W	P40159	199 aa	Known RBP	4.93	□□□□□ -1.62
TRP1	YDR007W	PAU15	P40585	124 aa		4.93	□□□□□ -1.62
TRP1	YDR007W	AIM25	P47140	327 aa		4.93	□□□□□ -1.62
TRP1	YDR007W	CYT2	Q00873	224 aa		4.93	□□□□□ -1.62
TRP1	YDR007W	VBA1	Q04301	562 aa		4.93	□□□□□ -1.62
TRP1	YDR007W	MRX9	Q07349	420 aa	Known RBP	4.93	□□□□□ -1.62
TRP1	YDR007W	PBP4	Q07362	185 aa	Known RBP	4.93	□□□□□ -1.62
TRP1	YDR007W	YMR230W-A	Q3E7B5	62 aa		4.93	□□□□□ -1.62
TRP1	YDR007W	ILV1	P00927	576 aa	Known RBP	4.92	□□□□□ -1.62
TRP1	YDR007W	RPL23A	P0CX41	137 aa	Known RBP	4.92	□□□□□ -1.62
TRP1	YDR007W	RPL23B	P0CX42	137 aa	Known RBP	4.92	□□□□□ -1.62
TRP1	YDR007W	ERD2	P18414	219 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	ARO2	P28777	376 aa	Known RBP	4.92	□□□□□ -1.62
TRP1	YDR007W	SEC17	P32602	292 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	TVP38	P36164	337 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	MRPL11	P36521	249 aa	Predicted RBP	4.92	□□□□□ -1.62
TRP1	YDR007W	YBR220C	P38318	560 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	FLX1	P40464	311 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	REE1	P40893	198 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YPL067C	Q02754	198 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	VPS28	Q02767	242 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YPL080C	Q02826	108 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	SHH3	Q04487	196 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YML096W	Q04489	525 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	PIN3	Q06449	215 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	ATG10	Q07879	167 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YPQ1	Q12010	308 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	RDI1	Q12434	202 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	SNF8	Q12483	233 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YNR034W-A	Q3E841	98 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YIL134C-A	Q45U18	67 aa		4.92	□□□□□ -1.62
TRP1	YDR007W	YOR304C-A	O14468	76 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	DDI2	P0CH63	225 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	DDI3	P0CH64	225 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	UNG1	P12887	359 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	TFS1	P14306	219 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	DAL82	P21705	255 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	ZRT1	P32804	376 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	SFK1	P35735	353 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	CUE1	P38428	203 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	RRG9	P40156	214 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	PRE6	P40303	254 aa	Known RBP	4.91	□□□□□ -1.62
TRP1	YDR007W	YJR111C	P47148	283 aa	Known RBP	4.91	□□□□□ -1.62
TRP1	YDR007W	CRH1	P53301	507 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	YNR066C	P53752	436 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	CNL1	Q06333	122 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	BER1	Q06688	274 aa	Known RBP	4.91	□□□□□ -1.62
TRP1	YDR007W	IRC25	Q07951	179 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	JID1	Q12350	301 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	SLO1	Q3E784	85 aa		4.91	□□□□□ -1.62
TRP1	YDR007W	SIR2	P06700	562 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	PRB1	P09232	635 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	YOL163W	P0CF20	169 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	STP22	P25604	385 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	MRP17	P28778	131 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
TRP1	YDR007W	YCR087C-A	P37263	153 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	EFM1	P38732	585 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	SNM1	P40993	198 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	GAB1	P41733	394 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	EGT2	P42835	1041 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	MOB2	P43563	287 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	YFL012W	P43580	148 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	IBA57	P47158	497 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	MGA1	P53050	456 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	YDR248C	Q03786	193 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	YMR253C	Q04835	414 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	NOC4	Q06512	552 aa	Predicted RBP	4.9	□□□□□ -1.63
TRP1	YDR007W	FRE8	Q12209	686 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	ATG5	Q12380	294 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	IZH2	Q12442	317 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	YLR099W-A	Q3E798	87 aa		4.9	□□□□□ -1.63
TRP1	YDR007W	UBI4	P0CG63	381 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	OAC1	P32332	324 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	SUA5	P32579	426 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	TIP20	P33891	701 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	SWD2	P36104	329 aa	Predicted RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	RPF1	P38805	295 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	COA1	P40452	197 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	AYR1	P40471	297 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	EMC5	P40540	141 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	SYS1	P41544	203 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	MDM34	P53083	459 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	BOR1	P53838	576 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	AAH1	P53909	347 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	TPS1	Q00764	495 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	GAS3	Q03655	524 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	PKR1	Q03880	122 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	SEC13	Q04491	297 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	AVO2	Q04749	426 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	YMR315W	Q04869	349 aa	Known RBP	4.89	□□□□□ -1.63
TRP1	YDR007W	ATG39	Q06159	398 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	HEM25	Q07534	307 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	NAG1	Q8TGN9	163 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	UBR2	Q07963	1872 aa		4.89	□□□□□ -1.63
TRP1	YDR007W	QCR7	P00128	127 aa		4.88	□□□□□ -1.63
TRP1	YDR007W	PUT1	P09368	476 aa		4.88	□□□□□ -1.63
TRP1	YDR007W	RPL40A	P0CH08	128 aa	Known RBP	4.88	□□□□□ -1.63
TRP1	YDR007W	RPL40B	P0CH09	128 aa	Known RBP	4.88	□□□□□ -1.63
TRP1	YDR007W	ASP3-2	P0CX77	362 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 36.4 ms