RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 EPC2Q52LR7 807 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 APTXQ7Z2E3 356 aaKnown RBP12.48□□□□□ -0.41
YBX3-213ENST00000542641 TMEM173Q86WV6 379 aaPredicted RBP12.48□□□□□ -0.41
YBX3-213ENST00000542641 SLC39A11Q8N1S5 342 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 CCDC150Q8NCX0 1101 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 C3orf58Q8NDZ4 430 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 TMEM169Q96HH4 297 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 IGSF21Q96ID5 467 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 ZNF560Q96MR9 790 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 SAMD11Q96NU1 681 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 PLVAPQ9BX97 442 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 IMPG2Q9BZV3 1241 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 MARCH5Q9NX47 278 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 RAB20Q9NX57 234 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 ADAM28Q9UKQ2 775 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 ANK1P16157 1881 aa12.48□□□□□ -0.41
YBX3-213ENST00000542641 TRIP11Q15643 1979 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 KPNA7A9QM74 516 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 SPTLC1O15269 473 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 FGF18O76093 207 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 RB1P06400 928 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 PAX3P23760 479 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 ERVK-21P61565 698 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 FANCCQ00597 558 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 KRT17Q04695 432 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 ZNF699Q32M78 642 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 SV2CQ496J9 727 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 WDR44Q5JSH3 913 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 FKBP15Q5T1M5 1219 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 DSTYKQ6XUX3 929 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 GBP6Q6ZN66 633 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 SPRED2Q7Z698 418 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 KLHL23Q8NBE8 558 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 BCL7CQ8WUZ0 217 aaPredicted RBP12.47□□□□□ -0.41
YBX3-213ENST00000542641 TAF4BQ92750 862 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 SEMA4DQ92854 862 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 PI4K2AQ9BTU6 479 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 CERS4Q9HA82 394 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.47□□□□□ -0.41
YBX3-213ENST00000542641 COQ4Q9Y3A0 265 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 LAMA3Q16787 3333 aa12.47□□□□□ -0.41
YBX3-213ENST00000542641 TDRD15B5MCY1 1934 aaKnown RBP12.47□□□□□ -0.41
YBX3-213ENST00000542641 SF3B1O75533 1304 aaKnown RBP eCLIP12.46□□□□□ -0.41
YBX3-213ENST00000542641 GTPBP10A4D1E9 387 aaKnown RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 LGALS16A8MUM7 142 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 C5orf67F2Z3F1 127 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 STAU1O95793 577 aaKnown RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 ASS1P00966 412 aaKnown RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 BRCC3P46736 316 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 PLCB2Q00722 1185 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 PLCB3Q01970 1234 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 UBXN1Q04323 297 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 EXOC3L4Q17RC7 722 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 WDR72Q3MJ13 1102 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 TIGD5Q53EQ6 642 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 FUT10Q6P4F1 479 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 CD300LGQ6UXG3 332 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 EHBP1Q8NDI1 1231 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 FBXO22Q8NEZ5 403 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 ARNTL2Q8WYA1 636 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 ELMO3Q96BJ8 720 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 SENP8Q96LD8 212 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 NAP1L5Q96NT1 182 aaPredicted RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 CRACR2AQ9BSW2 395 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 C11orf84Q9BUA3 381 aaPredicted RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 XYLT2Q9H1B5 865 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 GCNT4Q9P109 453 aa12.46□□□□□ -0.41
YBX3-213ENST00000542641 NXF1Q9UBU9 619 aaKnown RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 PUF60Q9UHX1 559 aaKnown RBP12.46□□□□□ -0.41
YBX3-213ENST00000542641 A0A1B0GTH6 734 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 I3L4J1 428 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 CYB561D2O14569 222 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 LRRN2O75325 713 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 P4HA1P13674 534 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 AARSP49588 968 aaKnown RBP eCLIP12.45□□□□□ -0.42
YBX3-213ENST00000542641 UBASH3AP57075 661 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 TNNC1P63316 161 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 NOP14P78316 857 aaKnown RBP12.45□□□□□ -0.42
YBX3-213ENST00000542641 ELAVL2Q12926 359 aaKnown RBP12.45□□□□□ -0.42
YBX3-213ENST00000542641 ZNF667Q5HYK9 610 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 FAM171A1Q5VUB5 890 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 SPOPLQ6IQ16 392 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 DDX53Q86TM3 631 aaKnown RBP12.45□□□□□ -0.42
YBX3-213ENST00000542641 LMO3Q8TAP4 145 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 SUSD3Q96L08 255 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 MMS19Q96T76 1030 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 GPR62Q9BZJ7 368 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 INTS2Q9H0H0 1204 aaKnown RBP12.45□□□□□ -0.42
YBX3-213ENST00000542641 VRTNQ9H8Y1 702 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 ALG13Q9NP73 1137 aaKnown RBP12.45□□□□□ -0.42
YBX3-213ENST00000542641 GDAP2Q9NXN4 497 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 IFNKQ9P0W0 207 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 STK39Q9UEW8 545 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 SNX9Q9Y5X1 595 aa12.45□□□□□ -0.42
YBX3-213ENST00000542641 PDCD11Q14690 1871 aaKnown RBP12.44□□□□□ -0.42
YBX3-213ENST00000542641 ARHGEF37A1IGU5 675 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 M0QZQ0 153 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 TEX33O43247 280 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 HUS1O60921 280 aa12.44□□□□□ -0.42
YBX3-213ENST00000542641 ODC1P11926 461 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms