RNA–Protein interactions for RNA: YML046W

PRP39, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP39, Length 1,890 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP39	YML046W	MAK16	P10962	306 aa	Predicted RBP	4.27	□□□□□ -1.73
PRP39	YML046W	KNS1	P32350	737 aa	Predicted RBP	4.27	□□□□□ -1.73
PRP39	YML046W	UTR2	P32623	467 aa		4.27	□□□□□ -1.73
PRP39	YML046W	SPT2	P06843	333 aa	Predicted RBP	4.26	□□□□□ -1.73
PRP39	YML046W	PDC5	P16467	563 aa	Known RBP	4.26	□□□□□ -1.73
PRP39	YML046W	ALA1	P40825	983 aa	Known RBP	4.26	□□□□□ -1.73
PRP39	YML046W	TBS1	P38114	1094 aa		4.25	□□□□□ -1.73
PRP39	YML046W	UTP7	P40055	554 aa	Known RBP	4.25	□□□□□ -1.73
PRP39	YML046W	PRY1	P47032	299 aa		4.25	□□□□□ -1.73
PRP39	YML046W	JJJ2	P46997	583 aa		4.24	□□□□□ -1.73
PRP39	YML046W	ALO1	P54783	526 aa	Known RBP	4.24	□□□□□ -1.73
PRP39	YML046W	ISR1	Q06098	443 aa	Known RBP	4.24	□□□□□ -1.73
PRP39	YML046W	MRPL16	P38064	232 aa		4.24	□□□□□ -1.73
PRP39	YML046W	YPL034W	Q03083	165 aa		4.24	□□□□□ -1.73
PRP39	YML046W	IRE1	P32361	1115 aa		4.23	□□□□□ -1.73
PRP39	YML046W	AIM7	Q12156	149 aa		4.23	□□□□□ -1.73
PRP39	YML046W	OMA1	P36163	345 aa		4.22	□□□□□ -1.73
PRP39	YML046W	SUM1	P46676	1062 aa		4.22	□□□□□ -1.73
PRP39	YML046W	STB3	Q12427	513 aa		4.22	□□□□□ -1.73
PRP39	YML046W	MRX12	P47084	519 aa		4.21	□□□□□ -1.74
PRP39	YML046W	SHM1	P37292	490 aa	Predicted RBP	4.2	□□□□□ -1.74
PRP39	YML046W	INP52	P50942	1183 aa		4.2	□□□□□ -1.74
PRP39	YML046W	TY1A-DR2	Q03964	440 aa	Known RBP	4.2	□□□□□ -1.74
PRP39	YML046W	PDC6	P26263	563 aa	Known RBP	4.19	□□□□□ -1.74
PRP39	YML046W	PSH1	Q12161	406 aa		4.19	□□□□□ -1.74
PRP39	YML046W	TPS3	P38426	1054 aa	Known RBP	4.18	□□□□□ -1.74
PRP39	YML046W	SPR3	P41901	512 aa		4.18	□□□□□ -1.74
PRP39	YML046W	EMP47	P43555	445 aa		4.18	□□□□□ -1.74
PRP39	YML046W	APL6	P46682	809 aa		4.18	□□□□□ -1.74
PRP39	YML046W	SSA2	P10592	639 aa	Known RBP	4.17	□□□□□ -1.74
PRP39	YML046W	HAL5	P38970	855 aa	Known RBP	4.16	□□□□□ -1.74
PRP39	YML046W	RPP1A	P05318	106 aa	Predicted RBP	4.15	□□□□□ -1.74
PRP39	YML046W	DMA1	P38823	416 aa		4.15	□□□□□ -1.74
PRP39	YML046W	SLX8	P40072	274 aa		4.15	□□□□□ -1.74
PRP39	YML046W	ISF1	P32488	338 aa		4.15	□□□□□ -1.75
PRP39	YML046W	MCM16	Q12262	181 aa		4.15	□□□□□ -1.75
PRP39	YML046W	AVT1	P47082	602 aa		4.13	□□□□□ -1.75
PRP39	YML046W	NHA1	Q99271	985 aa		4.13	□□□□□ -1.75
PRP39	YML046W	BUD9	P53226	547 aa		4.13	□□□□□ -1.75
PRP39	YML046W	MSC7	P38694	644 aa		4.12	□□□□□ -1.75
PRP39	YML046W	LEU1	P07264	779 aa	Known RBP	4.11	□□□□□ -1.75
PRP39	YML046W	ALG14	P38242	237 aa		4.11	□□□□□ -1.75
PRP39	YML046W	HDA3	Q06623	655 aa		4.11	□□□□□ -1.75
PRP39	YML046W	RPS31	P05759	152 aa	Known RBP	4.1	□□□□□ -1.75
PRP39	YML046W	SPT5	P27692	1063 aa	Known RBP	4.1	□□□□□ -1.75
PRP39	YML046W	PGM2	P37012	569 aa	Known RBP	4.1	□□□□□ -1.75
PRP39	YML046W	ATG3	P40344	310 aa		4.1	□□□□□ -1.75
PRP39	YML046W	CSE4	P36012	229 aa		4.09	□□□□□ -1.75
PRP39	YML046W	SOH1	P38633	127 aa		4.09	□□□□□ -1.75
PRP39	YML046W	HPC2	Q01448	625 aa		4.09	□□□□□ -1.76
PRP39	YML046W	UTP13	Q05946	817 aa	Known RBP	4.09	□□□□□ -1.76
PRP39	YML046W	AI3	P03877	415 aa		4.08	□□□□□ -1.76
PRP39	YML046W	RGP1	P16664	663 aa		4.08	□□□□□ -1.76
PRP39	YML046W	PGM1	P33401	570 aa	Known RBP	4.08	□□□□□ -1.76
PRP39	YML046W	ALD2	P47771	506 aa		4.08	□□□□□ -1.76
PRP39	YML046W	YPQ2	Q06328	317 aa		4.08	□□□□□ -1.76
PRP39	YML046W	YTA6	P40328	754 aa		4.07	□□□□□ -1.76
PRP39	YML046W	TFB3	Q03290	321 aa		4.07	□□□□□ -1.76
PRP39	YML046W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
PRP39	YML046W	AOS1	Q06624	347 aa		4.06	□□□□□ -1.76
PRP39	YML046W	MED7	Q08278	222 aa		4.06	□□□□□ -1.76
PRP39	YML046W	SAC7	P17121	654 aa		4.05	□□□□□ -1.76
PRP39	YML046W	COQ2	P32378	372 aa		4.05	□□□□□ -1.76
PRP39	YML046W	HEH2	Q03281	663 aa		4.05	□□□□□ -1.76
PRP39	YML046W	LIP5	P32875	414 aa		4.05	□□□□□ -1.76
PRP39	YML046W	SWI5	P08153	709 aa		4.04	□□□□□ -1.76
PRP39	YML046W	NAR1	P23503	491 aa	Known RBP	4.04	□□□□□ -1.76
PRP39	YML046W	YKR073C	P36153	106 aa		4.04	□□□□□ -1.76
PRP39	YML046W	ARI1	P53111	347 aa	Known RBP	4.04	□□□□□ -1.76
PRP39	YML046W	GIS4	Q04233	774 aa		4.04	□□□□□ -1.76
PRP39	YML046W	GAS5	Q08193	484 aa		4.04	□□□□□ -1.76
PRP39	YML046W	YDJ1	P25491	409 aa	Known RBP	4.03	□□□□□ -1.76
PRP39	YML046W	PRK1	P40494	810 aa		4.03	□□□□□ -1.76
PRP39	YML046W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
PRP39	YML046W	KAE1	P36132	386 aa		4.03	□□□□□ -1.77
PRP39	YML046W	RRM3	P38766	723 aa		4.03	□□□□□ -1.77
PRP39	YML046W	YPP1	P46951	817 aa		4.03	□□□□□ -1.77
PRP39	YML046W	YNL165W	P53891	406 aa		4.03	□□□□□ -1.77
PRP39	YML046W	TRP3	P00937	484 aa		4.02	□□□□□ -1.77
PRP39	YML046W	MCM1	P11746	286 aa		4.02	□□□□□ -1.77
PRP39	YML046W	ELM1	P32801	640 aa		4.02	□□□□□ -1.77
PRP39	YML046W	YBL036C	P38197	257 aa		4.02	□□□□□ -1.77
PRP39	YML046W	SFA1	P32771	386 aa		4.01	□□□□□ -1.77
PRP39	YML046W	TOS1	P38288	455 aa		4.01	□□□□□ -1.77
PRP39	YML046W	MLF3	P32047	452 aa		4.01	□□□□□ -1.77
PRP39	YML046W	AIM9	P40053	627 aa	Known RBP	4.01	□□□□□ -1.77
PRP39	YML046W	YLR122C	Q12312	125 aa		4	□□□□□ -1.77
PRP39	YML046W	RPS6A	P0CX37	236 aa	Known RBP	3.99	□□□□□ -1.77
PRP39	YML046W	RPS6B	P0CX38	236 aa	Predicted RBP	3.99	□□□□□ -1.77
PRP39	YML046W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
PRP39	YML046W	NCL1	P38205	684 aa	Known RBP	3.98	□□□□□ -1.77
PRP39	YML046W	KIN1	P13185	1064 aa		3.98	□□□□□ -1.77
PRP39	YML046W	CTH1	P47976	325 aa		3.97	□□□□□ -1.77
PRP39	YML046W	Q0182	Q9ZZW1	134 aa		3.97	□□□□□ -1.77
PRP39	YML046W	YFL034W	P43564	1073 aa		3.96	□□□□□ -1.77
PRP39	YML046W	MTO1	P53070	669 aa		3.96	□□□□□ -1.77
PRP39	YML046W	BRE4	Q07660	1125 aa		3.96	□□□□□ -1.77
PRP39	YML046W	RSC6	P25632	483 aa		3.96	□□□□□ -1.78
PRP39	YML046W	SAF1	P38352	637 aa		3.94	□□□□□ -1.78
PRP39	YML046W	SKP1	P52286	194 aa		3.94	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 39.8 ms