RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W RPS6BP0CX38 236 aaPredicted RBP8.19□□□□□ -1.1
PRP40YKL012W MET4P32389 672 aa8.19□□□□□ -1.1
PRP40YKL012W SEC8P32855 1065 aa8.19□□□□□ -1.1
PRP40YKL012W MGE1P38523 228 aa8.19□□□□□ -1.1
PRP40YKL012W PRE3P38624 215 aa8.19□□□□□ -1.1
PRP40YKL012W AIR2Q12476 344 aaKnown RBP8.19□□□□□ -1.1
PRP40YKL012W KIP2P28743 706 aa8.18□□□□□ -1.1
PRP40YKL012W EMW1P42842 904 aaKnown RBP8.18□□□□□ -1.1
PRP40YKL012W OYE2Q03558 400 aaKnown RBP8.18□□□□□ -1.1
PRP40YKL012W SWI5P08153 709 aa8.17□□□□□ -1.1
PRP40YKL012W YJR107WP47145 328 aa8.17□□□□□ -1.1
PRP40YKL012W BOI1P38041 980 aaKnown RBP8.17□□□□□ -1.1
PRP40YKL012W SPR3P41901 512 aa8.17□□□□□ -1.1
PRP40YKL012W SPT2P06843 333 aaPredicted RBP8.16□□□□□ -1.1
PRP40YKL012W GYP1Q08484 637 aa8.16□□□□□ -1.1
PRP40YKL012W YBR197CP38306 217 aa8.15□□□□□ -1.1
PRP40YKL012W APP1P53933 587 aa8.15□□□□□ -1.1
PRP40YKL012W ISU1Q03020 165 aa8.15□□□□□ -1.1
PRP40YKL012W TRS120Q04183 1289 aa8.15□□□□□ -1.1
PRP40YKL012W BUD31P25337 157 aaPredicted RBP8.14□□□□□ -1.11
PRP40YKL012W UTR2P32623 467 aa8.14□□□□□ -1.11
PRP40YKL012W FBP26P32604 452 aa8.13□□□□□ -1.11
PRP40YKL012W OCA5P38738 679 aa8.13□□□□□ -1.11
PRP40YKL012W SYH1Q02875 849 aaKnown RBP8.13□□□□□ -1.11
PRP40YKL012W YTA7P40340 1379 aa8.13□□□□□ -1.11
PRP40YKL012W CAB1Q04430 367 aa8.12□□□□□ -1.11
PRP40YKL012W APC11Q12157 165 aa8.12□□□□□ -1.11
PRP40YKL012W CHL1P22516 861 aaPredicted RBP8.12□□□□□ -1.11
PRP40YKL012W ISC10P32645 267 aa8.12□□□□□ -1.11
PRP40YKL012W MRF1P30775 413 aaPredicted RBP8.11□□□□□ -1.11
PRP40YKL012W MET1P36150 593 aa8.11□□□□□ -1.11
PRP40YKL012W PUS5Q06244 254 aa8.11□□□□□ -1.11
PRP40YKL012W GPI13Q07830 1017 aa8.11□□□□□ -1.11
PRP40YKL012W NAP1P25293 417 aaKnown RBP8.1□□□□□ -1.11
PRP40YKL012W MKS1P34072 584 aa8.1□□□□□ -1.11
PRP40YKL012W TBS1P38114 1094 aa8.1□□□□□ -1.11
PRP40YKL012W FOX2Q02207 900 aaKnown RBP8.1□□□□□ -1.11
PRP40YKL012W DAT1P13483 248 aaKnown RBP8.09□□□□□ -1.11
PRP40YKL012W BDP1P46678 594 aa8.09□□□□□ -1.11
PRP40YKL012W UFD2P54860 961 aa8.09□□□□□ -1.11
PRP40YKL012W BMT6Q12291 365 aa8.09□□□□□ -1.11
PRP40YKL012W PHO4P07270 312 aaKnown RBP8.08□□□□□ -1.12
PRP40YKL012W JIP5Q06214 492 aaPredicted RBP8.08□□□□□ -1.12
PRP40YKL012W MNL2Q12205 849 aa8.08□□□□□ -1.12
PRP40YKL012W STE6P12866 1290 aa8.07□□□□□ -1.12
PRP40YKL012W RPB10P22139 70 aa8.07□□□□□ -1.12
PRP40YKL012W RPP2BP02400 110 aaKnown RBP8.06□□□□□ -1.12
PRP40YKL012W HXT5P38695 592 aa8.06□□□□□ -1.12
PRP40YKL012W FYV10P40492 516 aa8.06□□□□□ -1.12
PRP40YKL012W NNF1P47149 201 aa8.06□□□□□ -1.12
PRP40YKL012W MAG2Q06436 670 aaKnown RBP8.06□□□□□ -1.12
PRP40YKL012W MRT4P33201 236 aaKnown RBP8.05□□□□□ -1.12
PRP40YKL012W WTM2Q12206 467 aa8.05□□□□□ -1.12
PRP40YKL012W RPT1P33299 467 aaKnown RBP8.05□□□□□ -1.12
PRP40YKL012W MCM1P11746 286 aa8.04□□□□□ -1.12
PRP40YKL012W KTR2P33550 425 aa8.04□□□□□ -1.12
PRP40YKL012W YPQ2Q06328 317 aa8.04□□□□□ -1.12
PRP40YKL012W MRPL33P20084 86 aa8.03□□□□□ -1.12
PRP40YKL012W GCD6P32501 712 aaKnown RBP8.03□□□□□ -1.12
PRP40YKL012W DAK2P43550 591 aa8.03□□□□□ -1.12
PRP40YKL012W SDH2P21801 266 aa8.02□□□□□ -1.13
PRP40YKL012W YBL086CP38177 466 aa8.02□□□□□ -1.13
PRP40YKL012W FRK1Q03002 865 aaPredicted RBP8.02□□□□□ -1.13
PRP40YKL012W DFG5Q05031 458 aa8.02□□□□□ -1.13
PRP40YKL012W BDS1Q08347 646 aa8.02□□□□□ -1.13
PRP40YKL012W SCD5P34758 872 aa8.01□□□□□ -1.13
PRP40YKL012W SUT1P53032 299 aaKnown RBP8.01□□□□□ -1.13
PRP40YKL012W YNL011CP53980 444 aa8.01□□□□□ -1.13
PRP40YKL012W CDC55Q00362 526 aa8.01□□□□□ -1.13
PRP40YKL012W MCM2P29469 868 aa8□□□□□ -1.13
PRP40YKL012W CST6P40535 587 aa8□□□□□ -1.13
PRP40YKL012W YJL171CP46992 396 aa8□□□□□ -1.13
PRP40YKL012W SPR28Q04921 423 aa8□□□□□ -1.13
PRP40YKL012W SUM1P46676 1062 aa7.99□□□□□ -1.13
PRP40YKL012W RMD1Q03441 430 aa7.99□□□□□ -1.13
PRP40YKL012W VPS35P34110 944 aa7.99□□□□□ -1.13
PRP40YKL012W FPR4Q06205 392 aaPredicted RBP7.99□□□□□ -1.13
PRP40YKL012W UTP7P40055 554 aaKnown RBP7.98□□□□□ -1.13
PRP40YKL012W SMC1P32908 1225 aa7.97□□□□□ -1.13
PRP40YKL012W SAM37P50110 327 aa7.97□□□□□ -1.13
PRP40YKL012W VMA3P25515 160 aa7.97□□□□□ -1.13
PRP40YKL012W HXT8P40886 569 aa7.97□□□□□ -1.13
PRP40YKL012W IOC4Q04213 475 aa7.97□□□□□ -1.13
PRP40YKL012W DLD3P39976 496 aaKnown RBP7.96□□□□□ -1.14
PRP40YKL012W UTP4Q06679 776 aaKnown RBP7.96□□□□□ -1.14
PRP40YKL012W RSC4Q02206 625 aa7.95□□□□□ -1.14
PRP40YKL012W VPS16Q03308 798 aa7.95□□□□□ -1.14
PRP40YKL012W PIN2Q12057 282 aa7.95□□□□□ -1.14
PRP40YKL012W RPS26AP39938 119 aaKnown RBP7.94□□□□□ -1.14
PRP40YKL012W RPS26BP39939 119 aaKnown RBP7.94□□□□□ -1.14
PRP40YKL012W MAD1P40957 749 aa7.94□□□□□ -1.14
PRP40YKL012W YGR122WP53272 402 aa7.94□□□□□ -1.14
PRP40YKL012W ALD3P54114 506 aa7.94□□□□□ -1.14
PRP40YKL012W ALD6P54115 500 aaKnown RBP7.94□□□□□ -1.14
PRP40YKL012W OXR1Q08952 273 aa7.94□□□□□ -1.14
PRP40YKL012W YOL098CQ12496 1037 aa7.94□□□□□ -1.14
PRP40YKL012W LDH1P38139 375 aa7.93□□□□□ -1.14
PRP40YKL012W CIC1P38779 376 aaKnown RBP7.93□□□□□ -1.14
PRP40YKL012W VAC8P39968 578 aa7.93□□□□□ -1.14
PRP40YKL012W ESF1Q06344 628 aaKnown RBP7.93□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 29.9 ms