RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 ADGRF5Q8IZF2 1346 aa26.92■■□□□ 1.9
CLN3-258ENST00000637184 ROCK2O75116 1388 aaKnown RBP26.92■■□□□ 1.9
CLN3-258ENST00000637184 KDM5AP29375 1690 aaKnown RBP26.91■■□□□ 1.9
CLN3-258ENST00000637184 VGFO15240 615 aaPredicted RBP26.9■■□□□ 1.9
CLN3-258ENST00000637184 EIF4G2P78344 907 aaKnown RBP eCLIP26.9■■□□□ 1.91e-9■■■■□ 22.4
CLN3-258ENST00000637184 NRXN1Q9ULB1 1477 aa26.9■■□□□ 1.9
CLN3-258ENST00000637184 CARD11Q9BXL7 1154 aa26.89■■□□□ 1.9
CLN3-258ENST00000637184 UBR1Q8IWV7 1749 aa26.87■■□□□ 1.89
CLN3-258ENST00000637184 ZFYVE9O95405 1425 aa26.86■■□□□ 1.89
CLN3-258ENST00000637184 KIAA1210Q9ULL0 1709 aa26.86■■□□□ 1.89
CLN3-258ENST00000637184 NBPF1Q3BBV0 1214 aa26.86■■□□□ 1.89
CLN3-258ENST00000637184 NUTM2DQ5VT03 806 aaPredicted RBP26.86■■□□□ 1.89
CLN3-258ENST00000637184 HSPA5P11021 654 aaKnown RBP26.85■■□□□ 1.89
CLN3-258ENST00000637184 GPRASP1Q5JY77 1395 aa26.85■■□□□ 1.89
CLN3-258ENST00000637184 MYO3AQ8NEV4 1616 aa26.84■■□□□ 1.89
CLN3-258ENST00000637184 HIRIP3Q9BW71 556 aaPredicted RBP26.84■■□□□ 1.89
CLN3-258ENST00000637184 PIK3C2GO75747 1445 aa26.84■■□□□ 1.89
CLN3-258ENST00000637184 PTPRMP28827 1452 aa26.83■■□□□ 1.89
CLN3-258ENST00000637184 LAMC1P11047 1609 aa26.83■■□□□ 1.89
CLN3-258ENST00000637184 RIMS2Q9UQ26 1411 aa26.83■■□□□ 1.88
CLN3-258ENST00000637184 USP47Q96K76 1375 aa26.82■■□□□ 1.88
CLN3-258ENST00000637184 SETD1BQ9UPS6 1966 aaKnown RBP26.81■■□□□ 1.88
CLN3-258ENST00000637184 CFAP70Q5T0N1 1121 aa26.8■■□□□ 1.88
CLN3-258ENST00000637184 HDGFP51858 240 aaKnown RBP26.79■■□□□ 1.88
CLN3-258ENST00000637184 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.79■■□□□ 1.88
CLN3-258ENST00000637184 TMEM2Q9UHN6 1383 aa26.78■■□□□ 1.88
CLN3-258ENST00000637184 C14orf93Q9H972 538 aaKnown RBP26.77■■□□□ 1.88
CLN3-258ENST00000637184 CEP170BQ9Y4F5 1589 aaPredicted RBP26.75■■□□□ 1.87
CLN3-258ENST00000637184 THEMISQ8N1K5 641 aaPredicted RBP26.74■■□□□ 1.87
CLN3-258ENST00000637184 SETBP1Q9Y6X0 1596 aa26.73■■□□□ 1.87
CLN3-258ENST00000637184 ZNF142P52746 1687 aaPredicted RBP26.71■■□□□ 1.87
CLN3-258ENST00000637184 SLIT1O75093 1534 aa26.69■■□□□ 1.86
CLN3-258ENST00000637184 IQGAP1P46940 1657 aa26.69■■□□□ 1.86
CLN3-258ENST00000637184 SCAF11Q99590 1463 aaKnown RBP26.69■■□□□ 1.86
CLN3-258ENST00000637184 ST20-MTHFSA0A0A6YYL1 179 aa26.69■■□□□ 1.86
CLN3-258ENST00000637184 SENP3Q9H4L4 574 aaPredicted RBP26.68■■□□□ 1.86
CLN3-258ENST00000637184 EID1Q9Y6B2 187 aa26.68■■□□□ 1.86
CLN3-258ENST00000637184 ARHGAP23Q9P227 1491 aa26.67■■□□□ 1.86
CLN3-258ENST00000637184 KDM4FA0A1W2PPD8 638 aa26.66■■□□□ 1.86
CLN3-258ENST00000637184 ADGRB1O14514 1584 aa26.66■■□□□ 1.86
CLN3-258ENST00000637184 TXNDC2Q86VQ3 553 aa26.66■■□□□ 1.86
CLN3-258ENST00000637184 ALKQ9UM73 1620 aa26.65■■□□□ 1.86
CLN3-258ENST00000637184 TMEM132EQ6IEE7 984 aa26.64■■□□□ 1.86
CLN3-258ENST00000637184 EIF3AQ14152 1382 aaKnown RBP26.64■■□□□ 1.85
CLN3-258ENST00000637184 LTKP29376 864 aa26.63■■□□□ 1.85
CLN3-258ENST00000637184 DIEXFQ68CQ4 756 aaKnown RBP26.61■■□□□ 1.85
CLN3-258ENST00000637184 BCANQ96GW7 911 aa26.61■■□□□ 1.85
CLN3-258ENST00000637184 PLEKHG1Q9ULL1 1385 aa26.6■■□□□ 1.85
CLN3-258ENST00000637184 NRXN3Q9Y4C0 1643 aa26.6■■□□□ 1.85
CLN3-258ENST00000637184 POLR1AO95602 1720 aaPredicted RBP26.58■■□□□ 1.85
CLN3-258ENST00000637184 ASXL1Q8IXJ9 1541 aa26.58■■□□□ 1.85
CLN3-258ENST00000637184 C11orf95C9JLR9 678 aaPredicted RBP26.57■■□□□ 1.84
CLN3-258ENST00000637184 SETD1AO15047 1707 aaKnown RBP26.57■■□□□ 1.84
CLN3-258ENST00000637184 TRAK1Q9UPV9 953 aa26.56■■□□□ 1.84
CLN3-258ENST00000637184 WASHC2AQ641Q2 1341 aa26.56■■□□□ 1.84
CLN3-258ENST00000637184 CCDC7Q96M83 1385 aa26.54■■□□□ 1.84
CLN3-258ENST00000637184 TESK2Q96S53 571 aa26.54■■□□□ 1.84
CLN3-258ENST00000637184 ANKLE2Q86XL3 938 aa26.53■■□□□ 1.84
CLN3-258ENST00000637184 YTHDC2Q9H6S0 1430 aaKnown RBP26.52■■□□□ 1.84
CLN3-258ENST00000637184 KIF7Q2M1P5 1343 aa26.52■■□□□ 1.84
CLN3-258ENST00000637184 DDX10Q13206 875 aaKnown RBP26.52■■□□□ 1.84
CLN3-258ENST00000637184 STK26Q9P289 416 aa26.51■■□□□ 1.83
CLN3-258ENST00000637184 ADAMTS13Q76LX8 1427 aa26.51■■□□□ 1.83
CLN3-258ENST00000637184 ARHGEF28Q8N1W1 1705 aaKnown RBP26.5■■□□□ 1.83
CLN3-258ENST00000637184 CENPJQ9HC77 1338 aaPredicted RBP26.49■■□□□ 1.83
CLN3-258ENST00000637184 TMF1P82094 1093 aa26.48■■□□□ 1.83
CLN3-258ENST00000637184 METP08581 1390 aa26.48■■□□□ 1.83
CLN3-258ENST00000637184 SLC24A1O60721 1099 aa26.48■■□□□ 1.83
CLN3-258ENST00000637184 MED14O60244 1454 aa26.46■■□□□ 1.83
CLN3-258ENST00000637184 LRPPRCP42704 1394 aaKnown RBP26.46■■□□□ 1.83
CLN3-258ENST00000637184 SLC26A8Q96RN1 970 aa26.46■■□□□ 1.83
CLN3-258ENST00000637184 POLR3GLQ9BT43 218 aa26.46■■□□□ 1.83
CLN3-258ENST00000637184 QRICH2Q9H0J4 1663 aa26.45■■□□□ 1.82
CLN3-258ENST00000637184 DIP2AQ14689 1571 aa26.45■■□□□ 1.82
CLN3-258ENST00000637184 SBNO2Q9Y2G9 1366 aa26.44■■□□□ 1.82
CLN3-258ENST00000637184 TBX22Q9Y458 520 aa26.44■■□□□ 1.82
CLN3-258ENST00000637184 DISP3Q9P2K9 1392 aa26.44■■□□□ 1.82
CLN3-258ENST00000637184 ABCC11Q96J66 1382 aa26.43■■□□□ 1.82
CLN3-258ENST00000637184 DLC1Q96QB1 1528 aa26.41■■□□□ 1.82
CLN3-258ENST00000637184 CDCA8Q53HL2 280 aa26.4■■□□□ 1.82
CLN3-258ENST00000637184 POGKQ9P215 609 aa26.4■■□□□ 1.82
CLN3-258ENST00000637184 KNDC1Q76NI1 1749 aa26.39■■□□□ 1.82
CLN3-258ENST00000637184 PRAM1Q96QH2 718 aa26.39■■□□□ 1.82
CLN3-258ENST00000637184 TECPR2O15040 1411 aa26.37■■□□□ 1.81
CLN3-258ENST00000637184 NPHP4O75161 1426 aaPredicted RBP26.37■■□□□ 1.81
CLN3-258ENST00000637184 NCKAP5LQ9HCH0 1330 aa26.36■■□□□ 1.81
CLN3-258ENST00000637184 SAFB2Q14151 953 aaKnown RBP eCLIP26.35■■□□□ 1.81
CLN3-258ENST00000637184 LMTK3Q96Q04 1460 aa26.35■■□□□ 1.81
CLN3-258ENST00000637184 SIRT1Q96EB6 747 aa26.34■■□□□ 1.81
CLN3-258ENST00000637184 PIK3R4Q99570 1358 aa26.34■■□□□ 1.81
CLN3-258ENST00000637184 CPS1P31327 1500 aa26.33■■□□□ 1.81
CLN3-258ENST00000637184 PTPRUQ92729 1446 aa26.32■■□□□ 1.8
CLN3-258ENST00000637184 WAPLQ7Z5K2 1190 aa26.32■■□□□ 1.8
CLN3-258ENST00000637184 FAM135BQ49AJ0 1406 aa26.32■■□□□ 1.8
CLN3-258ENST00000637184 HSPA2P54652 639 aa26.31■■□□□ 1.8
CLN3-258ENST00000637184 AMOTL2Q9Y2J4 779 aa26.3■■□□□ 1.8
CLN3-258ENST00000637184 EVC2Q86UK5 1308 aa26.29■■□□□ 1.8
CLN3-258ENST00000637184 PLEKHH1Q9ULM0 1364 aa26.28■■□□□ 1.8
CLN3-258ENST00000637184 MINK1Q8N4C8 1332 aaPredicted RBP26.28■■□□□ 1.8
CLN3-258ENST00000637184 ROBO2Q9HCK4 1378 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms