RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 STAG3Q9UJ98 1225 aa28.35■■■□□ 2.13
CLN3-250ENST00000636839 CFAP70Q5T0N1 1121 aa28.34■■■□□ 2.13
CLN3-250ENST00000636839 TNRQ92752 1358 aa28.34■■■□□ 2.13
CLN3-250ENST00000636839 MYOM2P54296 1465 aa28.33■■■□□ 2.13
CLN3-250ENST00000636839 C11orf95C9JLR9 678 aaPredicted RBP28.33■■■□□ 2.13
CLN3-250ENST00000636839 RPGRIP1LQ68CZ1 1315 aa28.33■■■□□ 2.13
CLN3-250ENST00000636839 PPLO60437 1756 aa28.32■■■□□ 2.12
CLN3-250ENST00000636839 C3P01024 1663 aa28.31■■■□□ 2.12
CLN3-250ENST00000636839 NEXMIFQ5QGS0 1516 aa28.31■■■□□ 2.12
CLN3-250ENST00000636839 GPRASP1Q5JY77 1395 aa28.3■■■□□ 2.12
CLN3-250ENST00000636839 NRXN1Q9ULB1 1477 aa28.29■■■□□ 2.12
CLN3-250ENST00000636839 ST20-MTHFSA0A0A6YYL1 179 aa28.28■■■□□ 2.12
CLN3-250ENST00000636839 A2ML1A8K2U0 1454 aa28.27■■■□□ 2.12
CLN3-250ENST00000636839 DDX10Q13206 875 aaKnown RBP28.27■■■□□ 2.12
CLN3-250ENST00000636839 WASHC2AQ641Q2 1341 aa28.25■■■□□ 2.11
CLN3-250ENST00000636839 VGFO15240 615 aaPredicted RBP28.25■■■□□ 2.11
CLN3-250ENST00000636839 PIK3C2GO75747 1445 aa28.24■■■□□ 2.11
CLN3-250ENST00000636839 RIMS1Q86UR5 1692 aaKnown RBP28.23■■■□□ 2.11
CLN3-250ENST00000636839 ADAMTSL3P82987 1691 aa28.21■■■□□ 2.11
CLN3-250ENST00000636839 C14orf93Q9H972 538 aaKnown RBP28.2■■■□□ 2.11
CLN3-250ENST00000636839 TMEM132EQ6IEE7 984 aa28.19■■■□□ 2.1
CLN3-250ENST00000636839 RIMS2Q9UQ26 1411 aa28.17■■■□□ 2.1
CLN3-250ENST00000636839 LAMC1P11047 1609 aa28.16■■■□□ 2.1
CLN3-250ENST00000636839 ZFYVE9O95405 1425 aa28.16■■■□□ 2.1
CLN3-250ENST00000636839 KIF7Q2M1P5 1343 aa28.15■■■□□ 2.1
CLN3-250ENST00000636839 KIAA1210Q9ULL0 1709 aa28.15■■■□□ 2.1
CLN3-250ENST00000636839 CCDC7Q96M83 1385 aa28.14■■■□□ 2.09
CLN3-250ENST00000636839 NLRP1Q9C000 1473 aa28.12■■■□□ 2.09
CLN3-250ENST00000636839 MIER1Q8N108 512 aa28.12■■■□□ 2.09
CLN3-250ENST00000636839 UBR1Q8IWV7 1749 aa28.12■■■□□ 2.09
CLN3-250ENST00000636839 TESK2Q96S53 571 aa28.11■■■□□ 2.09
CLN3-250ENST00000636839 POLR3GLQ9BT43 218 aa28.11■■■□□ 2.09
CLN3-250ENST00000636839 SCAF11Q99590 1463 aaKnown RBP28.11■■■□□ 2.09
CLN3-250ENST00000636839 IQGAP1P46940 1657 aa28.09■■■□□ 2.09
CLN3-250ENST00000636839 TMEM2Q9UHN6 1383 aa28.08■■■□□ 2.09
CLN3-250ENST00000636839 ADGRB1O14514 1584 aa28.08■■■□□ 2.09
CLN3-250ENST00000636839 TRAK1Q9UPV9 953 aa28.07■■■□□ 2.08
CLN3-250ENST00000636839 LTKP29376 864 aa28.06■■■□□ 2.08
CLN3-250ENST00000636839 SETBP1Q9Y6X0 1596 aa28.04■■■□□ 2.08
CLN3-250ENST00000636839 MYO3AQ8NEV4 1616 aa28.03■■■□□ 2.08
CLN3-250ENST00000636839 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.02■■■□□ 2.08
CLN3-250ENST00000636839 DISP3Q9P2K9 1392 aa28.02■■■□□ 2.08
CLN3-250ENST00000636839 KDM5AP29375 1690 aaKnown RBP28.02■■■□□ 2.08
CLN3-250ENST00000636839 PTPRMP28827 1452 aa28.01■■■□□ 2.07
CLN3-250ENST00000636839 STK26Q9P289 416 aa28.01■■■□□ 2.07
CLN3-250ENST00000636839 ASXL1Q8IXJ9 1541 aa28.01■■■□□ 2.07
CLN3-250ENST00000636839 ALKQ9UM73 1620 aa28■■■□□ 2.07
CLN3-250ENST00000636839 TXNDC2Q86VQ3 553 aa28■■■□□ 2.07
CLN3-250ENST00000636839 HDGFP51858 240 aaKnown RBP27.97■■■□□ 2.07
CLN3-250ENST00000636839 THEMISQ8N1K5 641 aaPredicted RBP27.97■■■□□ 2.07
CLN3-250ENST00000636839 BCANQ96GW7 911 aa27.97■■■□□ 2.07
CLN3-250ENST00000636839 POLR1AO95602 1720 aaPredicted RBP27.96■■■□□ 2.07
CLN3-250ENST00000636839 EIF3AQ14152 1382 aaKnown RBP27.96■■■□□ 2.07
CLN3-250ENST00000636839 CEP170BQ9Y4F5 1589 aaPredicted RBP27.95■■■□□ 2.06
CLN3-250ENST00000636839 NRXN3Q9Y4C0 1643 aa27.95■■■□□ 2.06
CLN3-250ENST00000636839 TMF1P82094 1093 aa27.92■■■□□ 2.06
CLN3-250ENST00000636839 ARHGAP23Q9P227 1491 aa27.92■■■□□ 2.06
CLN3-250ENST00000636839 EID1Q9Y6B2 187 aa27.92■■■□□ 2.06
CLN3-250ENST00000636839 METP08581 1390 aa27.91■■■□□ 2.06
CLN3-250ENST00000636839 CENPJQ9HC77 1338 aaPredicted RBP27.91■■■□□ 2.06
CLN3-250ENST00000636839 SLIT1O75093 1534 aa27.91■■■□□ 2.06
CLN3-250ENST00000636839 KDM4FA0A1W2PPD8 638 aa27.91■■■□□ 2.06
CLN3-250ENST00000636839 YTHDC2Q9H6S0 1430 aaKnown RBP27.9■■■□□ 2.06
CLN3-250ENST00000636839 SAFB2Q14151 953 aaKnown RBP eCLIP27.9■■■□□ 2.06
CLN3-250ENST00000636839 SETD1AO15047 1707 aaKnown RBP27.89■■■□□ 2.05
CLN3-250ENST00000636839 SLC26A8Q96RN1 970 aa27.88■■■□□ 2.05
CLN3-250ENST00000636839 SETD1BQ9UPS6 1966 aaKnown RBP27.87■■■□□ 2.05
CLN3-250ENST00000636839 PLEKHG1Q9ULL1 1385 aa27.87■■■□□ 2.05
CLN3-250ENST00000636839 ADAMTS13Q76LX8 1427 aa27.86■■■□□ 2.05
CLN3-250ENST00000636839 ARHGEF28Q8N1W1 1705 aaKnown RBP27.84■■■□□ 2.05
CLN3-250ENST00000636839 PRAM1Q96QH2 718 aa27.84■■■□□ 2.05
CLN3-250ENST00000636839 WAPLQ7Z5K2 1190 aa27.81■■■□□ 2.04
CLN3-250ENST00000636839 ZNF142P52746 1687 aaPredicted RBP27.81■■■□□ 2.04
CLN3-250ENST00000636839 LRPPRCP42704 1394 aaKnown RBP27.8■■■□□ 2.04
CLN3-250ENST00000636839 QRICH2Q9H0J4 1663 aa27.8■■■□□ 2.04
CLN3-250ENST00000636839 CNGB1Q14028 1251 aaPredicted RBP27.79■■■□□ 2.04
CLN3-250ENST00000636839 ANP32CO43423 234 aa27.78■■■□□ 2.04
CLN3-250ENST00000636839 POGKQ9P215 609 aa27.78■■■□□ 2.04
CLN3-250ENST00000636839 SBNO2Q9Y2G9 1366 aa27.78■■■□□ 2.04
CLN3-250ENST00000636839 PLEKHH1Q9ULM0 1364 aa27.77■■■□□ 2.04
CLN3-250ENST00000636839 MED14O60244 1454 aa27.77■■■□□ 2.04
CLN3-250ENST00000636839 ANKLE2Q86XL3 938 aa27.77■■■□□ 2.04
CLN3-250ENST00000636839 ABCC11Q96J66 1382 aa27.76■■■□□ 2.03
CLN3-250ENST00000636839 MINK1Q8N4C8 1332 aaPredicted RBP27.75■■■□□ 2.03
CLN3-250ENST00000636839 CDCA8Q53HL2 280 aa27.73■■■□□ 2.03
CLN3-250ENST00000636839 PANK3Q9H999 370 aa27.73■■■□□ 2.03
CLN3-250ENST00000636839 PTPRUQ92729 1446 aa27.72■■■□□ 2.03
CLN3-250ENST00000636839 TBX22Q9Y458 520 aa27.72■■■□□ 2.03
CLN3-250ENST00000636839 NCKAP5LQ9HCH0 1330 aa27.7■■■□□ 2.02
CLN3-250ENST00000636839 TULP4Q9NRJ4 1543 aa27.69■■■□□ 2.02
CLN3-250ENST00000636839 SLC24A1O60721 1099 aa27.69■■■□□ 2.02
CLN3-250ENST00000636839 CABP2Q9NPB3 220 aa27.69■■■□□ 2.02
CLN3-250ENST00000636839 ROBO2Q9HCK4 1378 aa27.68■■■□□ 2.02
CLN3-250ENST00000636839 DLC1Q96QB1 1528 aa27.68■■■□□ 2.02
CLN3-250ENST00000636839 PER1O15534 1290 aaPredicted RBP27.67■■■□□ 2.02
CLN3-250ENST00000636839 AMOTL2Q9Y2J4 779 aa27.67■■■□□ 2.02
CLN3-250ENST00000636839 EVC2Q86UK5 1308 aa27.66■■■□□ 2.02
CLN3-250ENST00000636839 HSPA2P54652 639 aa27.65■■■□□ 2.02
CLN3-250ENST00000636839 PRKRIP1Q9H875 184 aaPredicted RBP27.65■■■□□ 2.02
CLN3-250ENST00000636839 TECPR2O15040 1411 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms