RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, human

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-233	ENST00000610733	ANKRD45	Q5TZF3	282 aa		12.11	□□□□□ -0.47
TPM1-233	ENST00000610733	DNMBP	Q6XZF7	1577 aa		12.11	□□□□□ -0.47
TPM1-233	ENST00000610733	C14orf37	Q86TY3	774 aa		12.11	□□□□□ -0.47
TPM1-233	ENST00000610733	GRIN2B	Q13224	1484 aa		12.11	□□□□□ -0.47
TPM1-233	ENST00000610733	MAGI3	Q5TCQ9	1506 aa		12.11	□□□□□ -0.47
TPM1-233	ENST00000610733	HMOX1	P09601	288 aa		12.1	□□□□□ -0.47
TPM1-233	ENST00000610733	FBLN1	P23142	703 aa		12.1	□□□□□ -0.47
TPM1-233	ENST00000610733	PMFBP1	Q8TBY8	1022 aa		12.09	□□□□□ -0.47
TPM1-233	ENST00000610733	CAMSAP2	Q08AD1	1489 aa		12.09	□□□□□ -0.47
TPM1-233	ENST00000610733	TRO	Q12816	1431 aa	Predicted RBP	12.09	□□□□□ -0.47
TPM1-233	ENST00000610733	CGNL1	Q0VF96	1302 aa		12.08	□□□□□ -0.48
TPM1-233	ENST00000610733	SLFN5	Q08AF3	891 aa		12.08	□□□□□ -0.48
TPM1-233	ENST00000610733	PLEKHH1	Q9ULM0	1364 aa		12.07	□□□□□ -0.48
TPM1-233	ENST00000610733	ERBIN	Q96RT1	1412 aa		12.07	□□□□□ -0.48
TPM1-233	ENST00000610733	EXOSC9	Q06265	439 aa	Known RBP	12.07	□□□□□ -0.48
TPM1-233	ENST00000610733	UGGT2	Q9NYU1	1516 aa		12.07	□□□□□ -0.48
TPM1-233	ENST00000610733	THUMPD2	Q9BTF0	503 aa	Known RBP	12.07	□□□□□ -0.48
TPM1-233	ENST00000610733	ZKSCAN2	Q63HK3	967 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	MPND	Q8N594	471 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	PER1	O15534	1290 aa	Predicted RBP	12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	C8orf34	Q49A92	452 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	L1TD1	Q5T7N2	865 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	SLC4A10	Q6U841	1118 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	DZIP1L	Q8IYY4	767 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	ZNF428	Q96B54	188 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	C22orf23	Q9BZE7	217 aa		12.06	□□□□□ -0.48
TPM1-233	ENST00000610733	GOLGA6L22	H0YM25	854 aa		12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	PTMA	P06454	111 aa	Known RBP	12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	WWC1	Q8IX03	1113 aa		12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	RIPK4	P57078	832 aa		12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	NECTIN2	Q92692	538 aa		12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	HECW1	Q76N89	1606 aa		12.05	□□□□□ -0.48
TPM1-233	ENST00000610733	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.04	□□□□□ -0.48
TPM1-233	ENST00000610733	ROCK1	Q13464	1354 aa		12.04	□□□□□ -0.48
TPM1-233	ENST00000610733	KANK1	Q14678	1352 aa		12.04	□□□□□ -0.48
TPM1-233	ENST00000610733	TESK2	Q96S53	571 aa		12.04	□□□□□ -0.48
TPM1-233	ENST00000610733	WASHC2C	Q9Y4E1	1318 aa		12.04	□□□□□ -0.48
TPM1-233	ENST00000610733	ESF1	Q9H501	851 aa	Known RBP	12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	CFAP43	Q8NDM7	1665 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	RLBP1	P12271	317 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	VSIG10	Q8N0Z9	540 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	PANK2	Q9BZ23	570 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	PCDHB15	Q9Y5E8	787 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	IQGAP2	Q13576	1575 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	RUNDC1	Q96C34	613 aa		12.03	□□□□□ -0.48
TPM1-233	ENST00000610733	TEX14	Q8IWB6	1497 aa		12.02	□□□□□ -0.48
TPM1-233	ENST00000610733	TRAK2	O60296	914 aa		12.01	□□□□□ -0.49
TPM1-233	ENST00000610733	SPATA31E1	Q6ZUB1	1445 aa		12.01	□□□□□ -0.49
TPM1-233	ENST00000610733	ADGRF5	Q8IZF2	1346 aa		12.01	□□□□□ -0.49
TPM1-233	ENST00000610733	NOB1	Q9ULX3	412 aa	Known RBP	12.01	□□□□□ -0.49
TPM1-233	ENST00000610733	PZP	P20742	1482 aa		12	□□□□□ -0.49
TPM1-233	ENST00000610733	PDE4C	Q08493	712 aa		12	□□□□□ -0.49
TPM1-233	ENST00000610733	TBC1D2	Q9BYX2	928 aa		12	□□□□□ -0.49
TPM1-233	ENST00000610733	DDX49	Q9Y6V7	483 aa	Known RBP	12	□□□□□ -0.49
TPM1-233	ENST00000610733	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12	□□□□□ -0.49
TPM1-233	ENST00000610733	DENND4B	O75064	1496 aa	Predicted RBP	12	□□□□□ -0.49
TPM1-233	ENST00000610733	BCL11B	Q9C0K0	894 aa	Predicted RBP	12	□□□□□ -0.49
TPM1-233	ENST00000610733	RSPH4A	Q5TD94	716 aa		12	□□□□□ -0.49
TPM1-233	ENST00000610733	RNF123	Q5XPI4	1314 aa		11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	TRH	P20396	242 aa	Predicted RBP	11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	ARHGAP5	Q13017	1502 aa		11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	EIF3A	Q14152	1382 aa	Known RBP	11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	NUP153	P49790	1475 aa	Known RBP	11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	PLEKHH2	Q8IVE3	1493 aa		11.99	□□□□□ -0.49
TPM1-233	ENST00000610733	IPO8	O15397	1037 aa	Known RBP	11.98	□□□□□ -0.49
TPM1-233	ENST00000610733	RARS	P54136	660 aa	Known RBP	11.98	□□□□□ -0.49
TPM1-233	ENST00000610733	GBP4	Q96PP9	640 aa		11.97	□□□□□ -0.49
TPM1-233	ENST00000610733	PARD3	Q8TEW0	1356 aa		11.97	□□□□□ -0.49
TPM1-233	ENST00000610733	MSN	P26038	577 aa	Known RBP	11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	LTV1	Q96GA3	475 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	CHMP5	Q9NZZ3	219 aa		11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	RNF214	Q8ND24	703 aa		11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	CARD14	Q9BXL6	1004 aa		11.96	□□□□□ -0.49
TPM1-233	ENST00000610733	LMOD2	Q6P5Q4	547 aa		11.96	□□□□□ -0.5
TPM1-233	ENST00000610733	TMEM57	Q8N5G2	664 aa		11.96	□□□□□ -0.5
TPM1-233	ENST00000610733	CUL7	Q14999	1698 aa		11.96	□□□□□ -0.5
TPM1-233	ENST00000610733	SSH1	Q8WYL5	1049 aa		11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	TRIM6-TRIM34	B2RNG4	842 aa		11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	DCTN1	Q14203	1278 aa		11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	LRPPRC	P42704	1394 aa	Known RBP	11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	PDE3A	Q14432	1141 aa		11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	MCTP1	Q6DN14	999 aa		11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.95	□□□□□ -0.5
TPM1-233	ENST00000610733	ZMYND15	Q9H091	742 aa		11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	MCM4	P33991	863 aa		11.94	□□□□□ -0.5
TPM1-233	ENST00000610733		A0A0U1RQG5	324 aa	Predicted RBP	11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	PRKAR2B	P31323	418 aa		11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	RBM42	Q9BTD8	480 aa	Known RBP	11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	RSPH6A	Q9H0K4	717 aa		11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	DDX19B	Q9UMR2	479 aa		11.94	□□□□□ -0.5
TPM1-233	ENST00000610733	KIAA0586	Q9BVV6	1533 aa		11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	SCAPER	Q9BY12	1400 aa		11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	DIAPH1	O60610	1272 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	RBM10	P98175	930 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	RILPL2	Q969X0	211 aa		11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	MVP	Q14764	893 aa	Known RBP	11.93	□□□□□ -0.5
TPM1-233	ENST00000610733	PDIA4	P13667	645 aa	Known RBP	11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms