RNA–Protein interactions for RNA: ENST00000610733.1

TPM1-233, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 3,957 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-233ENST00000610733 NISCHQ9Y2I1 1504 aa17.37■□□□□ 0.37
TPM1-233ENST00000610733 DCAF8L2P0C7V8 631 aa16.68■□□□□ 0.26
TPM1-233ENST00000610733 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
TPM1-233ENST00000610733 SUPT5HO00267 1087 aaKnown RBP16.66■□□□□ 0.26
TPM1-233ENST00000610733 EHMT2Q96KQ7 1210 aa16.07■□□□□ 0.16
TPM1-233ENST00000610733 PCGF6Q9BYE7 350 aa15.96■□□□□ 0.15
TPM1-233ENST00000610733 PPARGC1BQ86YN6 1023 aaKnown RBP15.67■□□□□ 0.1
TPM1-233ENST00000610733 FAM9AQ8IZU1 332 aaPredicted RBP15.65■□□□□ 0.1
TPM1-233ENST00000610733 LOC105371045A0A1W2PR82 267 aa15.54■□□□□ 0.08
TPM1-233ENST00000610733 TTBK1Q5TCY1 1321 aaPredicted RBP15.51■□□□□ 0.07
TPM1-233ENST00000610733 HRCP23327 699 aa15.44■□□□□ 0.06
TPM1-233ENST00000610733 CHIC1Q5VXU3 224 aa15.43■□□□□ 0.06
TPM1-233ENST00000610733 PELP1Q8IZL8 1130 aaKnown RBP15.39■□□□□ 0.05
TPM1-233ENST00000610733 MYT1Q01538 1121 aa15.19■□□□□ 0.02
TPM1-233ENST00000610733 TRIM41Q8WV44 630 aa15.13■□□□□ 0.01
TPM1-233ENST00000610733 MYO15BQ96JP2 1530 aa15.04■□□□□ -0
TPM1-233ENST00000610733 RANGAP1P46060 587 aaPredicted RBP15.01□□□□□ -0.01
TPM1-233ENST00000610733 TRIM26Q12899 539 aaPredicted RBP15.01□□□□□ -0.01
TPM1-233ENST00000610733 CCER1Q8TC90 406 aaPredicted RBP14.97□□□□□ -0.01
TPM1-233ENST00000610733 YTHDC1Q96MU7 727 aaKnown RBP14.92□□□□□ -0.02
TPM1-233ENST00000610733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.89□□□□□ -0.03
TPM1-233ENST00000610733 ZEB1P37275 1124 aaPredicted RBP14.74□□□□□ -0.05
TPM1-233ENST00000610733 UBTFP17480 764 aaKnown RBP14.69□□□□□ -0.06
TPM1-233ENST00000610733 HNRNPUL2Q1KMD3 747 aaKnown RBP14.59□□□□□ -0.07
TPM1-233ENST00000610733 CENPBP07199 599 aaPredicted RBP14.58□□□□□ -0.08
TPM1-233ENST00000610733 SCAF1Q9H7N4 1312 aaKnown RBP14.55□□□□□ -0.08
TPM1-233ENST00000610733 ZCCHC6Q5VYS8 1495 aaKnown RBP14.54□□□□□ -0.08
TPM1-233ENST00000610733 APLP2Q06481 763 aa14.53□□□□□ -0.08
TPM1-233ENST00000610733 DIEXFQ68CQ4 756 aaKnown RBP14.52□□□□□ -0.09
TPM1-233ENST00000610733 GTF3C3Q9Y5Q9 886 aa14.52□□□□□ -0.09
TPM1-233ENST00000610733 ITGAEP38570 1179 aa14.42□□□□□ -0.1
TPM1-233ENST00000610733 NEUROD1Q13562 356 aa14.41□□□□□ -0.1
TPM1-233ENST00000610733 DCAF1Q9Y4B6 1507 aa14.38□□□□□ -0.11
TPM1-233ENST00000610733 ATP1B4Q9UN42 357 aaPredicted RBP14.35□□□□□ -0.11
TPM1-233ENST00000610733 ACIN1Q9UKV3 1341 aaKnown RBP14.32□□□□□ -0.12
TPM1-233ENST00000610733 ABCC9O60706 1549 aa14.32□□□□□ -0.12
TPM1-233ENST00000610733 PABPN1Q86U42 306 aaKnown RBP eCLIP14.27□□□□□ -0.13
TPM1-233ENST00000610733 SCRIBQ14160 1630 aa14.24□□□□□ -0.13
TPM1-233ENST00000610733 BCANQ96GW7 911 aa14.17□□□□□ -0.14
TPM1-233ENST00000610733 ZNF316A6NFI3 1004 aaPredicted RBP14.13□□□□□ -0.15
TPM1-233ENST00000610733 CNGB1Q14028 1251 aaPredicted RBP14.12□□□□□ -0.15
TPM1-233ENST00000610733 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
TPM1-233ENST00000610733 MIER1Q8N108 512 aa14.1□□□□□ -0.15
TPM1-233ENST00000610733 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
TPM1-233ENST00000610733 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
TPM1-233ENST00000610733 CECR2Q9BXF3 1484 aa13.97□□□□□ -0.17
TPM1-233ENST00000610733 RB1CC1Q8TDY2 1594 aa13.95□□□□□ -0.18
TPM1-233ENST00000610733 HIRIP3Q9BW71 556 aaPredicted RBP13.93□□□□□ -0.18
TPM1-233ENST00000610733 P3H3Q8IVL6 736 aa13.9□□□□□ -0.19
TPM1-233ENST00000610733 FAM50AQ14320 339 aaKnown RBP13.89□□□□□ -0.19
TPM1-233ENST00000610733 NEFLP07196 543 aa13.88□□□□□ -0.19
TPM1-233ENST00000610733 ERICH6Q7L0X2 663 aa13.88□□□□□ -0.19
TPM1-233ENST00000610733 POLR3GLQ9BT43 218 aa13.84□□□□□ -0.19
TPM1-233ENST00000610733 CEP162Q5TB80 1403 aa13.83□□□□□ -0.2
TPM1-233ENST00000610733 SOGA1O94964 1423 aa13.81□□□□□ -0.2
TPM1-233ENST00000610733 PRKCSHP14314 528 aaPredicted RBP13.78□□□□□ -0.2
TPM1-233ENST00000610733 DDX10Q13206 875 aaKnown RBP13.78□□□□□ -0.2
TPM1-233ENST00000610733 TRIM52Q96A61 297 aa13.77□□□□□ -0.2
TPM1-233ENST00000610733 ABCC8Q09428 1581 aa13.76□□□□□ -0.21
TPM1-233ENST00000610733 ARID3CA6NKF2 412 aa13.75□□□□□ -0.21
TPM1-233ENST00000610733 FKBP8Q14318 412 aa13.74□□□□□ -0.21
TPM1-233ENST00000610733 MROH2BQ7Z745 1585 aa13.74□□□□□ -0.21
TPM1-233ENST00000610733 SENP3-EIF4A1A0A087X0R7 540 aa13.73□□□□□ -0.21
TPM1-233ENST00000610733 CCDC88BA6NC98 1476 aa13.72□□□□□ -0.21
TPM1-233ENST00000610733 IRX6P78412 446 aaPredicted RBP13.71□□□□□ -0.22
TPM1-233ENST00000610733 BCL11AQ9H165 835 aa13.69□□□□□ -0.22
TPM1-233ENST00000610733 KCNH8Q96L42 1107 aa13.66□□□□□ -0.22
TPM1-233ENST00000610733 RUSC2Q8N2Y8 1516 aa13.66□□□□□ -0.22
TPM1-233ENST00000610733 CLIP1P30622 1438 aa13.65□□□□□ -0.22
TPM1-233ENST00000610733 WIZO95785 1651 aa13.62□□□□□ -0.23
TPM1-233ENST00000610733 SIN3AQ96ST3 1273 aa13.6□□□□□ -0.23
TPM1-233ENST00000610733 SUPT16HQ9Y5B9 1047 aaKnown RBP13.59□□□□□ -0.23
TPM1-233ENST00000610733 KANK4Q5T7N3 995 aaPredicted RBP13.58□□□□□ -0.24
TPM1-233ENST00000610733 TNIKQ9UKE5 1360 aa13.56□□□□□ -0.24
TPM1-233ENST00000610733 ANP32CO43423 234 aa13.56□□□□□ -0.24
TPM1-233ENST00000610733 ZNF326Q5BKZ1 582 aaKnown RBP13.56□□□□□ -0.24
TPM1-233ENST00000610733 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
TPM1-233ENST00000610733 WRNQ14191 1432 aaPredicted RBP eCLIP13.51□□□□□ -0.25
TPM1-233ENST00000610733 CHIC2Q9UKJ5 165 aa13.5□□□□□ -0.25
TPM1-233ENST00000610733 GOLGA3Q08378 1498 aa13.49□□□□□ -0.25
TPM1-233ENST00000610733 FAM9BQ8IZU0 186 aa13.47□□□□□ -0.25
TPM1-233ENST00000610733 SALL2Q9Y467 1007 aaPredicted RBP13.42□□□□□ -0.26
TPM1-233ENST00000610733 TSHZ2Q9NRE2 1034 aa13.39□□□□□ -0.27
TPM1-233ENST00000610733 CDK11AQ9UQ88 783 aaPredicted RBP13.38□□□□□ -0.27
TPM1-233ENST00000610733 NBR1Q14596 966 aa13.36□□□□□ -0.27
TPM1-233ENST00000610733 RRP7BPQ9NSQ0 103 aa13.36□□□□□ -0.27
TPM1-233ENST00000610733 TONSLQ96HA7 1378 aa13.35□□□□□ -0.27
TPM1-233ENST00000610733 BAZ1AQ9NRL2 1556 aaPredicted RBP13.34□□□□□ -0.27
TPM1-233ENST00000610733 CEP164Q9UPV0 1460 aa13.34□□□□□ -0.27
TPM1-233ENST00000610733 RAPGEF2Q9Y4G8 1499 aa13.34□□□□□ -0.27
TPM1-233ENST00000610733 SLC24A1O60721 1099 aa13.33□□□□□ -0.28
TPM1-233ENST00000610733 NPM2Q86SE8 214 aaKnown RBP13.33□□□□□ -0.28
TPM1-233ENST00000610733 ANP32EQ9BTT0 268 aa13.33□□□□□ -0.28
TPM1-233ENST00000610733 VPS8Q8N3P4 1428 aa13.31□□□□□ -0.28
TPM1-233ENST00000610733 EEA1Q15075 1411 aa13.29□□□□□ -0.28
TPM1-233ENST00000610733 ZNF777Q9ULD5 760 aaPredicted RBP13.29□□□□□ -0.28
TPM1-233ENST00000610733 NACADO15069 1562 aa13.28□□□□□ -0.28
TPM1-233ENST00000610733 DHX57Q6P158 1386 aaKnown RBP13.27□□□□□ -0.29
TPM1-233ENST00000610733 FOXD1Q16676 465 aa13.27□□□□□ -0.29
TPM1-233ENST00000610733 RBM19Q9Y4C8 960 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms