RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 LMTK3Q96Q04 1460 aa21.96■■□□□ 1.11
UPF1-206ENST00000598471 PPLO60437 1756 aa21.95■■□□□ 1.1
UPF1-206ENST00000598471 RALGAPBQ86X10 1494 aa21.95■■□□□ 1.1
UPF1-206ENST00000598471 NEXMIFQ5QGS0 1516 aa21.95■■□□□ 1.1
UPF1-206ENST00000598471 MYO3AQ8NEV4 1616 aa21.95■■□□□ 1.1
UPF1-206ENST00000598471 VGFO15240 615 aaPredicted RBP21.93■■□□□ 1.1
UPF1-206ENST00000598471 MYO5BQ9ULV0 1848 aa21.93■■□□□ 1.1
UPF1-206ENST00000598471 UBR1Q8IWV7 1749 aa21.92■■□□□ 1.1
UPF1-206ENST00000598471 ZFYVE9O95405 1425 aa21.91■■□□□ 1.1
UPF1-206ENST00000598471 HDGFP51858 240 aaKnown RBP21.91■■□□□ 1.1
UPF1-206ENST00000598471 NRXN1Q9ULB1 1477 aa21.9■■□□□ 1.1
UPF1-206ENST00000598471 TRPM1Q7Z4N2 1603 aa21.9■■□□□ 1.1
UPF1-206ENST00000598471 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.1
UPF1-206ENST00000598471 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.89■■□□□ 1.09
UPF1-206ENST00000598471 ROCK2O75116 1388 aaKnown RBP21.88■■□□□ 1.09
UPF1-206ENST00000598471 ADGRF5Q8IZF2 1346 aa21.88■■□□□ 1.09
UPF1-206ENST00000598471 CEP170BQ9Y4F5 1589 aaPredicted RBP21.88■■□□□ 1.09
UPF1-206ENST00000598471 KIAA1210Q9ULL0 1709 aa21.86■■□□□ 1.09
UPF1-206ENST00000598471 ZNF142P52746 1687 aaPredicted RBP21.86■■□□□ 1.09
UPF1-206ENST00000598471 THEMISQ8N1K5 641 aaPredicted RBP21.86■■□□□ 1.09
UPF1-206ENST00000598471 PIK3C2GO75747 1445 aa21.86■■□□□ 1.09
UPF1-206ENST00000598471 TMEM2Q9UHN6 1383 aa21.86■■□□□ 1.09
UPF1-206ENST00000598471 CARD11Q9BXL7 1154 aa21.84■■□□□ 1.09
UPF1-206ENST00000598471 GPRASP1Q5JY77 1395 aa21.84■■□□□ 1.09
UPF1-206ENST00000598471 EIF4G2P78344 907 aaKnown RBP eCLIP21.83■■□□□ 1.09
UPF1-206ENST00000598471 LAMC1P11047 1609 aa21.83■■□□□ 1.08
UPF1-206ENST00000598471 SLIT1O75093 1534 aa21.82■■□□□ 1.08
UPF1-206ENST00000598471 ZNF316A6NFI3 1004 aaPredicted RBP21.81■■□□□ 1.08
UPF1-206ENST00000598471 NUTM2DQ5VT03 806 aaPredicted RBP21.81■■□□□ 1.08
UPF1-206ENST00000598471 EID1Q9Y6B2 187 aa21.81■■□□□ 1.08
UPF1-206ENST00000598471 ARHGAP23Q9P227 1491 aa21.8■■□□□ 1.08
UPF1-206ENST00000598471 NCKAP5LQ9HCH0 1330 aa21.79■■□□□ 1.08
UPF1-206ENST00000598471 USP47Q96K76 1375 aa21.78■■□□□ 1.08
UPF1-206ENST00000598471 C14orf93Q9H972 538 aaKnown RBP21.78■■□□□ 1.08
UPF1-206ENST00000598471 SETBP1Q9Y6X0 1596 aa21.78■■□□□ 1.08
UPF1-206ENST00000598471 NBPF1Q3BBV0 1214 aa21.77■■□□□ 1.08
UPF1-206ENST00000598471 CFAP70Q5T0N1 1121 aa21.77■■□□□ 1.08
UPF1-206ENST00000598471 HSPA5P11021 654 aaKnown RBP21.75■■□□□ 1.07
UPF1-206ENST00000598471 TXNDC2Q86VQ3 553 aa21.75■■□□□ 1.07
UPF1-206ENST00000598471 PLEKHG1Q9ULL1 1385 aa21.74■■□□□ 1.07
UPF1-206ENST00000598471 SCAF11Q99590 1463 aaKnown RBP21.73■■□□□ 1.07
UPF1-206ENST00000598471 EIF3AQ14152 1382 aaKnown RBP21.72■■□□□ 1.07
UPF1-206ENST00000598471 ALKQ9UM73 1620 aa21.71■■□□□ 1.07
UPF1-206ENST00000598471 BCANQ96GW7 911 aa21.71■■□□□ 1.07
UPF1-206ENST00000598471 LTKP29376 864 aa21.7■■□□□ 1.06
UPF1-206ENST00000598471 ANKLE2Q86XL3 938 aa21.7■■□□□ 1.06
UPF1-206ENST00000598471 ADGRB1O14514 1584 aa21.7■■□□□ 1.06
UPF1-206ENST00000598471 IQGAP1P46940 1657 aa21.69■■□□□ 1.06
UPF1-206ENST00000598471 STRCQ7RTU9 1775 aa21.68■■□□□ 1.06
UPF1-206ENST00000598471 NRXN3Q9Y4C0 1643 aa21.67■■□□□ 1.06
UPF1-206ENST00000598471 DMRT2Q9Y5R5 561 aa21.67■■□□□ 1.06
UPF1-206ENST00000598471 HIRIP3Q9BW71 556 aaPredicted RBP21.66■■□□□ 1.06
UPF1-206ENST00000598471 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
UPF1-206ENST00000598471 DIP2AQ14689 1571 aa21.65■■□□□ 1.06
UPF1-206ENST00000598471 ASXL1Q8IXJ9 1541 aa21.65■■□□□ 1.06
UPF1-206ENST00000598471 TMEM132EQ6IEE7 984 aa21.64■■□□□ 1.05
UPF1-206ENST00000598471 ST20-MTHFSA0A0A6YYL1 179 aa21.63■■□□□ 1.05
UPF1-206ENST00000598471 SETD1AO15047 1707 aaKnown RBP21.63■■□□□ 1.05
UPF1-206ENST00000598471 ADAMTS13Q76LX8 1427 aa21.62■■□□□ 1.05
UPF1-206ENST00000598471 YTHDC2Q9H6S0 1430 aaKnown RBP21.62■■□□□ 1.05
UPF1-206ENST00000598471 POLR1AO95602 1720 aaPredicted RBP21.6■■□□□ 1.05
UPF1-206ENST00000598471 TRAK1Q9UPV9 953 aa21.6■■□□□ 1.05
UPF1-206ENST00000598471 TBX22Q9Y458 520 aa21.6■■□□□ 1.05
UPF1-206ENST00000598471 LRPPRCP42704 1394 aaKnown RBP21.6■■□□□ 1.05
UPF1-206ENST00000598471 MED14O60244 1454 aa21.59■■□□□ 1.05
UPF1-206ENST00000598471 SLC24A1O60721 1099 aa21.59■■□□□ 1.05
UPF1-206ENST00000598471 NPHP4O75161 1426 aaPredicted RBP21.57■■□□□ 1.04
UPF1-206ENST00000598471 STK26Q9P289 416 aa21.57■■□□□ 1.04
UPF1-206ENST00000598471 METP08581 1390 aa21.57■■□□□ 1.04
UPF1-206ENST00000598471 CENPJQ9HC77 1338 aaPredicted RBP21.56■■□□□ 1.04
UPF1-206ENST00000598471 SLC26A8Q96RN1 970 aa21.56■■□□□ 1.04
UPF1-206ENST00000598471 DLC1Q96QB1 1528 aa21.55■■□□□ 1.04
UPF1-206ENST00000598471 ARHGEF28Q8N1W1 1705 aaKnown RBP21.55■■□□□ 1.04
UPF1-206ENST00000598471 ABCC11Q96J66 1382 aa21.55■■□□□ 1.04
UPF1-206ENST00000598471 PIK3R4Q99570 1358 aa21.54■■□□□ 1.04
UPF1-206ENST00000598471 SBNO2Q9Y2G9 1366 aa21.54■■□□□ 1.04
UPF1-206ENST00000598471 TMF1P82094 1093 aa21.54■■□□□ 1.04
UPF1-206ENST00000598471 KNDC1Q76NI1 1749 aa21.53■■□□□ 1.04
UPF1-206ENST00000598471 CCDC7Q96M83 1385 aa21.52■■□□□ 1.04
UPF1-206ENST00000598471 TESK2Q96S53 571 aa21.52■■□□□ 1.04
UPF1-206ENST00000598471 TECPR2O15040 1411 aa21.52■■□□□ 1.04
UPF1-206ENST00000598471 POGKQ9P215 609 aa21.51■■□□□ 1.03
UPF1-206ENST00000598471 QRICH2Q9H0J4 1663 aa21.5■■□□□ 1.03
UPF1-206ENST00000598471 CDCA8Q53HL2 280 aa21.5■■□□□ 1.03
UPF1-206ENST00000598471 WASHC2AQ641Q2 1341 aa21.5■■□□□ 1.03
UPF1-206ENST00000598471 ZNF335Q9H4Z2 1342 aaPredicted RBP21.5■■□□□ 1.03
UPF1-206ENST00000598471 CPS1P31327 1500 aa21.5■■□□□ 1.03
UPF1-206ENST00000598471 SIRT1Q96EB6 747 aa21.49■■□□□ 1.03
UPF1-206ENST00000598471 KIF7Q2M1P5 1343 aa21.49■■□□□ 1.03
UPF1-206ENST00000598471 FAM135BQ49AJ0 1406 aa21.48■■□□□ 1.03
UPF1-206ENST00000598471 PRAM1Q96QH2 718 aa21.48■■□□□ 1.03
UPF1-206ENST00000598471 C11orf95C9JLR9 678 aaPredicted RBP21.46■■□□□ 1.03
UPF1-206ENST00000598471 POLR3GLQ9BT43 218 aa21.45■■□□□ 1.02
UPF1-206ENST00000598471 AMOTL2Q9Y2J4 779 aa21.45■■□□□ 1.02
UPF1-206ENST00000598471 DISP3Q9P2K9 1392 aa21.45■■□□□ 1.02
UPF1-206ENST00000598471 PTCH1Q13635 1447 aa21.45■■□□□ 1.02
UPF1-206ENST00000598471 PTPRUQ92729 1446 aa21.45■■□□□ 1.02
UPF1-206ENST00000598471 DIEXFQ68CQ4 756 aaKnown RBP21.44■■□□□ 1.02
UPF1-206ENST00000598471 XRN1Q8IZH2 1706 aaKnown RBP21.43■■□□□ 1.02
UPF1-206ENST00000598471 DDX10Q13206 875 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms