RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CHGAP10645 457 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-211ENST00000595945 MYO3AQ8NEV4 1616 aa21.04■□□□□ 0.96
SHKBP1-211ENST00000595945 LAMC1P11047 1609 aa21.02■□□□□ 0.96
SHKBP1-211ENST00000595945 ZFYVE9O95405 1425 aa21.01■□□□□ 0.95
SHKBP1-211ENST00000595945 ZNF326Q5BKZ1 582 aaKnown RBP21■□□□□ 0.95
SHKBP1-211ENST00000595945 PTPRMP28827 1452 aa21■□□□□ 0.95
SHKBP1-211ENST00000595945 ZNF142P52746 1687 aaPredicted RBP20.99■□□□□ 0.95
SHKBP1-211ENST00000595945 GPRASP1Q5JY77 1395 aa20.98■□□□□ 0.95
SHKBP1-211ENST00000595945 ADGRF5Q8IZF2 1346 aa20.98■□□□□ 0.95
SHKBP1-211ENST00000595945 PIK3C2GO75747 1445 aa20.95■□□□□ 0.95
SHKBP1-211ENST00000595945 CEP170BQ9Y4F5 1589 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-211ENST00000595945 ZNF316A6NFI3 1004 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-211ENST00000595945 STAG3Q9UJ98 1225 aa20.94■□□□□ 0.94
SHKBP1-211ENST00000595945 RIMS2Q9UQ26 1411 aa20.94■□□□□ 0.94
SHKBP1-211ENST00000595945 VGFO15240 615 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-211ENST00000595945 SLIT1O75093 1534 aa20.91■□□□□ 0.94
SHKBP1-211ENST00000595945 IQGAP1P46940 1657 aa20.91■□□□□ 0.94
SHKBP1-211ENST00000595945 ARHGAP23Q9P227 1491 aa20.91■□□□□ 0.94
SHKBP1-211ENST00000595945 SETBP1Q9Y6X0 1596 aa20.9■□□□□ 0.94
SHKBP1-211ENST00000595945 ROCK2O75116 1388 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-211ENST00000595945 TMEM2Q9UHN6 1383 aa20.9■□□□□ 0.94
SHKBP1-211ENST00000595945 NBPF1Q3BBV0 1214 aa20.9■□□□□ 0.94
SHKBP1-211ENST00000595945 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
SHKBP1-211ENST00000595945 SETD1AO15047 1707 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 NRXN3Q9Y4C0 1643 aa20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 HSPA5P11021 654 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 EIF4G2P78344 907 aaKnown RBP eCLIP20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 CARD11Q9BXL7 1154 aa20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 C14orf93Q9H972 538 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 ADGRB1O14514 1584 aa20.87■□□□□ 0.93
SHKBP1-211ENST00000595945 USP47Q96K76 1375 aa20.86■□□□□ 0.93
SHKBP1-211ENST00000595945 KDM4FA0A1W2PPD8 638 aa20.85■□□□□ 0.93
SHKBP1-211ENST00000595945 CFAP70Q5T0N1 1121 aa20.85■□□□□ 0.93
SHKBP1-211ENST00000595945 NUTM2DQ5VT03 806 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-211ENST00000595945 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.85■□□□□ 0.93
SHKBP1-211ENST00000595945 ALKQ9UM73 1620 aa20.83■□□□□ 0.93
SHKBP1-211ENST00000595945 POLR1AO95602 1720 aaPredicted RBP20.83■□□□□ 0.92
SHKBP1-211ENST00000595945 THEMISQ8N1K5 641 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-211ENST00000595945 ASXL1Q8IXJ9 1541 aa20.82■□□□□ 0.92
SHKBP1-211ENST00000595945 HDGFP51858 240 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-211ENST00000595945 SCAF11Q99590 1463 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-211ENST00000595945 HIRIP3Q9BW71 556 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-211ENST00000595945 PLEKHG1Q9ULL1 1385 aa20.78■□□□□ 0.92
SHKBP1-211ENST00000595945 LTKP29376 864 aa20.78■□□□□ 0.92
SHKBP1-211ENST00000595945 ARHGEF28Q8N1W1 1705 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-211ENST00000595945 MED14O60244 1454 aa20.75■□□□□ 0.91
SHKBP1-211ENST00000595945 ADAMTS13Q76LX8 1427 aa20.74■□□□□ 0.91
SHKBP1-211ENST00000595945 TXNDC2Q86VQ3 553 aa20.73■□□□□ 0.91
SHKBP1-211ENST00000595945 EID1Q9Y6B2 187 aa20.73■□□□□ 0.91
SHKBP1-211ENST00000595945 ST20-MTHFSA0A0A6YYL1 179 aa20.72■□□□□ 0.91
SHKBP1-211ENST00000595945 DIP2AQ14689 1571 aa20.72■□□□□ 0.91
SHKBP1-211ENST00000595945 KNDC1Q76NI1 1749 aa20.71■□□□□ 0.91
SHKBP1-211ENST00000595945 TMEM132EQ6IEE7 984 aa20.71■□□□□ 0.91
SHKBP1-211ENST00000595945 EIF3AQ14152 1382 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-211ENST00000595945 YTHDC2Q9H6S0 1430 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-211ENST00000595945 C11orf95C9JLR9 678 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-211ENST00000595945 TESK2Q96S53 571 aa20.68■□□□□ 0.9
SHKBP1-211ENST00000595945 DLC1Q96QB1 1528 aa20.68■□□□□ 0.9
SHKBP1-211ENST00000595945 QRICH2Q9H0J4 1663 aa20.67■□□□□ 0.9
SHKBP1-211ENST00000595945 ANKLE2Q86XL3 938 aa20.66■□□□□ 0.9
SHKBP1-211ENST00000595945 SENP3Q9H4L4 574 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-211ENST00000595945 METP08581 1390 aa20.66■□□□□ 0.9
SHKBP1-211ENST00000595945 LRPPRCP42704 1394 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-211ENST00000595945 CCDC7Q96M83 1385 aa20.66■□□□□ 0.9
SHKBP1-211ENST00000595945 WASHC2AQ641Q2 1341 aa20.65■□□□□ 0.9
SHKBP1-211ENST00000595945 LMTK3Q96Q04 1460 aa20.64■□□□□ 0.89
SHKBP1-211ENST00000595945 SBNO2Q9Y2G9 1366 aa20.64■□□□□ 0.89
SHKBP1-211ENST00000595945 TECPR2O15040 1411 aa20.63■□□□□ 0.89
SHKBP1-211ENST00000595945 ABCC11Q96J66 1382 aa20.63■□□□□ 0.89
SHKBP1-211ENST00000595945 TRAK1Q9UPV9 953 aa20.63■□□□□ 0.89
SHKBP1-211ENST00000595945 TBX22Q9Y458 520 aa20.63■□□□□ 0.89
SHKBP1-211ENST00000595945 CPS1P31327 1500 aa20.63■□□□□ 0.89
SHKBP1-211ENST00000595945 KIF7Q2M1P5 1343 aa20.62■□□□□ 0.89
SHKBP1-211ENST00000595945 CENPJQ9HC77 1338 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-211ENST00000595945 NPHP4O75161 1426 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-211ENST00000595945 CHD2O14647 1828 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-211ENST00000595945 XRN1Q8IZH2 1706 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-211ENST00000595945 DISP3Q9P2K9 1392 aa20.59■□□□□ 0.89
SHKBP1-211ENST00000595945 BCANQ96GW7 911 aa20.59■□□□□ 0.89
SHKBP1-211ENST00000595945 PTPRUQ92729 1446 aa20.59■□□□□ 0.89
SHKBP1-211ENST00000595945 PIK3R4Q99570 1358 aa20.59■□□□□ 0.89
SHKBP1-211ENST00000595945 SIRT1Q96EB6 747 aa20.58■□□□□ 0.89
SHKBP1-211ENST00000595945 STK26Q9P289 416 aa20.58■□□□□ 0.89
SHKBP1-211ENST00000595945 DIEXFQ68CQ4 756 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-211ENST00000595945 SLC26A8Q96RN1 970 aa20.57■□□□□ 0.88
SHKBP1-211ENST00000595945 FAM135BQ49AJ0 1406 aa20.56■□□□□ 0.88
SHKBP1-211ENST00000595945 TMF1P82094 1093 aa20.56■□□□□ 0.88
SHKBP1-211ENST00000595945 STRCQ7RTU9 1775 aa20.56■□□□□ 0.88
SHKBP1-211ENST00000595945 SLC24A1O60721 1099 aa20.55■□□□□ 0.88
SHKBP1-211ENST00000595945 NCKAP5LQ9HCH0 1330 aa20.54■□□□□ 0.88
SHKBP1-211ENST00000595945 DDX10Q13206 875 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-211ENST00000595945 TULP4Q9NRJ4 1543 aa20.53■□□□□ 0.88
SHKBP1-211ENST00000595945 PRAM1Q96QH2 718 aa20.52■□□□□ 0.88
SHKBP1-211ENST00000595945 PTCH1Q13635 1447 aa20.52■□□□□ 0.87
SHKBP1-211ENST00000595945 MYOM1P52179 1685 aa20.51■□□□□ 0.87
SHKBP1-211ENST00000595945 PLEKHH1Q9ULM0 1364 aa20.51■□□□□ 0.87
SHKBP1-211ENST00000595945 ROBO2Q9HCK4 1378 aa20.5■□□□□ 0.87
SHKBP1-211ENST00000595945 HSPA2P54652 639 aa20.5■□□□□ 0.87
SHKBP1-211ENST00000595945 NWD1Q149M9 1564 aa20.5■□□□□ 0.87
SHKBP1-211ENST00000595945 POGKQ9P215 609 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms