RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 V9GY48 417 aaPredicted RBP3.72□□□□□ -1.81
SMCHD1-211ENST00000584897 ZBTB24O43167 697 aaPredicted RBP3.71□□□□□ -1.82
SMCHD1-211ENST00000584897 USP46P62068 366 aa3.71□□□□□ -1.82
SMCHD1-211ENST00000584897 PNMA1Q8ND90 353 aa3.7□□□□□ -1.82
SMCHD1-211ENST00000584897 RIMBP3CA6NJZ7 1639 aa3.7□□□□□ -1.82
SMCHD1-211ENST00000584897 RIMBP3BA6NNM3 1639 aa3.7□□□□□ -1.82
SMCHD1-211ENST00000584897 RIMBP3Q9UFD9 1639 aa3.7□□□□□ -1.82
SMCHD1-211ENST00000584897 NUDT18Q6ZVK8 323 aa3.69□□□□□ -1.82
SMCHD1-211ENST00000584897 BAZ1AQ9NRL2 1556 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-211ENST00000584897 CD2BP2O95400 341 aaKnown RBP3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 RDH13Q8NBN7 331 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 BCANQ96GW7 911 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 SEPT9Q9UHD8 586 aaPredicted RBP3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 CADPS2Q86UW7 1296 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 GPIHBP1Q8IV16 184 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 GNPATO15228 680 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 PROX2Q3B8N5 592 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 SAMD7Q7Z3H4 446 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 TSHZ2Q9NRE2 1034 aa3.68□□□□□ -1.82
SMCHD1-211ENST00000584897 DCAF1Q9Y4B6 1507 aa3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 ACTN4O43707 911 aaKnown RBP3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 FMNL1O95466 1100 aaPredicted RBP3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 BCAMP50895 628 aa3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 COL9A1P20849 921 aa3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 SWT1Q5T5J6 900 aaKnown RBP3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 NUTM1Q86Y26 1132 aa3.67□□□□□ -1.82
SMCHD1-211ENST00000584897 NRG2O14511 850 aaPredicted RBP3.66□□□□□ -1.82
SMCHD1-211ENST00000584897 PADI6Q6TGC4 694 aa3.66□□□□□ -1.82
SMCHD1-211ENST00000584897 ERCC6Q03468 1493 aa3.66□□□□□ -1.82
SMCHD1-211ENST00000584897 DGAT1O75907 488 aa3.66□□□□□ -1.82
SMCHD1-211ENST00000584897 OSBPP22059 807 aa3.65□□□□□ -1.82
SMCHD1-211ENST00000584897 CLCN1P35523 988 aa3.65□□□□□ -1.82
SMCHD1-211ENST00000584897 WBP1LQ9NX94 342 aa3.65□□□□□ -1.82
SMCHD1-211ENST00000584897 MINK1Q8N4C8 1332 aaPredicted RBP3.65□□□□□ -1.82
SMCHD1-211ENST00000584897 ADH1BP00325 375 aa3.65□□□□□ -1.83
SMCHD1-211ENST00000584897 RPIAP49247 311 aa3.65□□□□□ -1.83
SMCHD1-211ENST00000584897 Q6ZNB5 142 aa3.65□□□□□ -1.83
SMCHD1-211ENST00000584897 REPIN1Q9BWE0 567 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-211ENST00000584897 SLC6A16Q9GZN6 736 aa3.65□□□□□ -1.83
SMCHD1-211ENST00000584897 POTEEQ6S8J3 1075 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 ZNF592Q92610 1267 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 ATP6V1AP38606 617 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 ANKLE1Q8NAG6 615 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 TTC13Q8NBP0 860 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 MTRQ99707 1265 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 LAMC3Q9Y6N6 1575 aa3.64□□□□□ -1.83
SMCHD1-211ENST00000584897 TMEM134Q9H6X4 195 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 RCCD1A6NED2 376 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 GFRA3O60609 400 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 ZPR1O75312 459 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 CFHP08603 1231 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 TSKSQ9UJT2 592 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 PKDCCQ504Y2 493 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 SALL2Q9Y467 1007 aaPredicted RBP3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 WDR62O43379 1518 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 ERCC6L2Q5T890 1561 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 SPDYE5A6NIY4 337 aa3.63□□□□□ -1.83
SMCHD1-211ENST00000584897 TESPA1A2RU30 521 aaPredicted RBP3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 SLC19A1P41440 591 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 PRKD2Q9BZL6 878 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 ADGRG1Q9Y653 693 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 HMGXB3Q12766 1538 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 FAM181BA6NEQ2 426 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 TSR1Q2NL82 804 aaKnown RBP3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 PTGDRQ13258 359 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 ARMC2Q8NEN0 867 aa3.62□□□□□ -1.83
SMCHD1-211ENST00000584897 CYP4X1Q8N118 509 aa3.61□□□□□ -1.83
SMCHD1-211ENST00000584897 SENP2Q9HC62 589 aa3.61□□□□□ -1.83
SMCHD1-211ENST00000584897 PLEKHG3A1L390 1219 aa3.61□□□□□ -1.83
SMCHD1-211ENST00000584897 KCNV2Q8TDN2 545 aa3.61□□□□□ -1.83
SMCHD1-211ENST00000584897 NCAPD3P42695 1498 aa3.61□□□□□ -1.83
SMCHD1-211ENST00000584897 KIF21AQ7Z4S6 1674 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 MAP2K5Q13163 448 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 KIFC2Q96AC6 838 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 ATP1B4Q9UN42 357 aaPredicted RBP3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 EYA1Q99502 592 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 RSPH6AQ9H0K4 717 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 DDX11L8A8MPP1 907 aa3.6□□□□□ -1.83
SMCHD1-211ENST00000584897 TRAF7Q6Q0C0 670 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 SPSB2Q99619 263 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 ARHGEF11O15085 1522 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 SMAPO00193 183 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 APBB1O00213 710 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 CTC1Q2NKJ3 1217 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 TJAP1Q5JTD0 557 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 ZNF598Q86UK7 904 aaKnown RBP3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 COPS2P61201 443 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 PXYLP1Q8TE99 480 aa3.59□□□□□ -1.83
SMCHD1-211ENST00000584897 PDZRN3Q9UPQ7 1066 aa3.59□□□□□ -1.84
SMCHD1-211ENST00000584897 TTC24A2A3L6 582 aaPredicted RBP3.58□□□□□ -1.84
SMCHD1-211ENST00000584897 PRM3Q9NNZ6 103 aa3.58□□□□□ -1.84
SMCHD1-211ENST00000584897 MSS51Q4VC12 460 aa3.58□□□□□ -1.84
SMCHD1-211ENST00000584897 TPRNQ4KMQ1 711 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 GCGRP47871 477 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 PPP1R18Q6NYC8 613 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 CCDC125Q86Z20 511 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 SLC16A10Q8TF71 515 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 GPCPD1Q9NPB8 672 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 SMARCA2P51531 1590 aa3.57□□□□□ -1.84
SMCHD1-211ENST00000584897 PRR20EP86478 221 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms