RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ADGRB3O60242 1522 aa19.99■□□□□ 0.79
SS18-219ENST00000581570 HDGFP51858 240 aaKnown RBP19.99■□□□□ 0.79
SS18-219ENST00000581570 PTPN23Q9H3S7 1636 aa19.98■□□□□ 0.79
SS18-219ENST00000581570 CROCC2H7BZ55 1655 aa19.97■□□□□ 0.79
SS18-219ENST00000581570 PHLPP1O60346 1717 aa19.97■□□□□ 0.79
SS18-219ENST00000581570 PPP1R15AO75807 674 aaPredicted RBP19.97■□□□□ 0.79
SS18-219ENST00000581570 MEX3CQ5U5Q3 659 aaKnown RBP19.97■□□□□ 0.79
SS18-219ENST00000581570 PLEKHG1Q9ULL1 1385 aa19.96■□□□□ 0.79
SS18-219ENST00000581570 APLP2Q06481 763 aa19.96■□□□□ 0.79
SS18-219ENST00000581570 ZNF772Q68DY9 489 aaPredicted RBP19.96■□□□□ 0.79
SS18-219ENST00000581570 SPATA31A6Q5VVP1 1343 aa19.96■□□□□ 0.79
SS18-219ENST00000581570 SETD1AO15047 1707 aaKnown RBP19.96■□□□□ 0.79
SS18-219ENST00000581570 C14orf37Q86TY3 774 aa19.95■□□□□ 0.78
SS18-219ENST00000581570 UPF1Q92900 1129 aaKnown RBP eCLIP19.95■□□□□ 0.78
SS18-219ENST00000581570 TBX22Q9Y458 520 aa19.95■□□□□ 0.78
SS18-219ENST00000581570 TRIM52Q96A61 297 aa19.94■□□□□ 0.78
SS18-219ENST00000581570 ZFYVE9O95405 1425 aa19.93■□□□□ 0.78
SS18-219ENST00000581570 FGD6Q6ZV73 1430 aa19.93■□□□□ 0.78
SS18-219ENST00000581570 RIMS2Q9UQ26 1411 aa19.93■□□□□ 0.78
SS18-219ENST00000581570 NCOA3Q9Y6Q9 1424 aa19.93■□□□□ 0.78
SS18-219ENST00000581570 LRP6O75581 1613 aa19.91■□□□□ 0.78
SS18-219ENST00000581570 CADPS2Q86UW7 1296 aa19.91■□□□□ 0.78
SS18-219ENST00000581570 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
SS18-219ENST00000581570 ATF3P18847 181 aa19.9■□□□□ 0.78
SS18-219ENST00000581570 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.9■□□□□ 0.78
SS18-219ENST00000581570 C19orf44Q9H6X5 657 aa19.9■□□□□ 0.78
SS18-219ENST00000581570 CHGAP10645 457 aaKnown RBP19.89■□□□□ 0.77
SS18-219ENST00000581570 RPRD2Q5VT52 1461 aaKnown RBP19.89■□□□□ 0.77
SS18-219ENST00000581570 RXRBP28702 533 aa19.88■□□□□ 0.77
SS18-219ENST00000581570 CHD2O14647 1828 aaKnown RBP19.88■□□□□ 0.77
SS18-219ENST00000581570 NUTM2DQ5VT03 806 aaPredicted RBP19.86■□□□□ 0.77
SS18-219ENST00000581570 NUTM2BA6NNL0 878 aaPredicted RBP19.85■□□□□ 0.77
SS18-219ENST00000581570 NUTM2EB1AL46 878 aaPredicted RBP19.85■□□□□ 0.77
SS18-219ENST00000581570 NUTM2AQ8IVF1 878 aaPredicted RBP19.85■□□□□ 0.77
SS18-219ENST00000581570 ANKRD50Q9ULJ7 1429 aa19.85■□□□□ 0.77
SS18-219ENST00000581570 ADGRL2O95490 1459 aa19.84■□□□□ 0.77
SS18-219ENST00000581570 ADAMTS13Q76LX8 1427 aa19.83■□□□□ 0.76
SS18-219ENST00000581570 AHDC1Q5TGY3 1603 aaPredicted RBP19.83■□□□□ 0.76
SS18-219ENST00000581570 PIK3R4Q99570 1358 aa19.83■□□□□ 0.76
SS18-219ENST00000581570 FAM50AQ14320 339 aaKnown RBP19.82■□□□□ 0.76
SS18-219ENST00000581570 BRINP3Q76B58 766 aa19.82■□□□□ 0.76
SS18-219ENST00000581570 TMEM131LA2VDJ0 1609 aa19.82■□□□□ 0.76
SS18-219ENST00000581570 AMOTL2Q9Y2J4 779 aa19.81■□□□□ 0.76
SS18-219ENST00000581570 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.79■□□□□ 0.76
SS18-219ENST00000581570 GCC2Q8IWJ2 1684 aa19.79■□□□□ 0.76
SS18-219ENST00000581570 MYO5BQ9ULV0 1848 aa19.79■□□□□ 0.76
SS18-219ENST00000581570 AFF2P51816 1311 aa19.78■□□□□ 0.76
SS18-219ENST00000581570 SHPRHQ149N8 1683 aa19.78■□□□□ 0.76
SS18-219ENST00000581570 CDK12Q9NYV4 1490 aaPredicted RBP19.77■□□□□ 0.76
SS18-219ENST00000581570 DIP2AQ14689 1571 aa19.76■□□□□ 0.75
SS18-219ENST00000581570 PTPRUQ92729 1446 aa19.75■□□□□ 0.75
SS18-219ENST00000581570 LRRC59Q96AG4 307 aaKnown RBP19.74■□□□□ 0.75
SS18-219ENST00000581570 QTRT2Q9H974 415 aaKnown RBP19.73■□□□□ 0.75
SS18-219ENST00000581570 SETD5Q9C0A6 1442 aa19.73■□□□□ 0.75
SS18-219ENST00000581570 TRPM2O94759 1503 aa19.72■□□□□ 0.75
SS18-219ENST00000581570 DCCP43146 1447 aa19.72■□□□□ 0.75
SS18-219ENST00000581570 RBM6P78332 1123 aaKnown RBP19.71■□□□□ 0.75
SS18-219ENST00000581570 C8orf37Q96NL8 207 aa19.71■□□□□ 0.75
SS18-219ENST00000581570 ASXL1Q8IXJ9 1541 aa19.7■□□□□ 0.74
SS18-219ENST00000581570 MST1RQ04912 1400 aa19.68■□□□□ 0.74
SS18-219ENST00000581570 DDX17Q92841 729 aaKnown RBP19.67■□□□□ 0.74
SS18-219ENST00000581570 RGS12O14924 1447 aa19.67■□□□□ 0.74
SS18-219ENST00000581570 UNC13BO14795 1591 aa19.66■□□□□ 0.74
SS18-219ENST00000581570 E9PCH4 1651 aa19.66■□□□□ 0.74
SS18-219ENST00000581570 NUP155O75694 1391 aa19.65■□□□□ 0.74
SS18-219ENST00000581570 PNPLA6Q8IY17 1366 aa19.65■□□□□ 0.74
SS18-219ENST00000581570 NGLY1Q96IV0 654 aa19.64■□□□□ 0.73
SS18-219ENST00000581570 ADAMTS2O95450 1211 aa19.63■□□□□ 0.73
SS18-219ENST00000581570 ZNF326Q5BKZ1 582 aaKnown RBP19.63■□□□□ 0.73
SS18-219ENST00000581570 METP08581 1390 aa19.62■□□□□ 0.73
SS18-219ENST00000581570 ROCK1Q13464 1354 aa19.61■□□□□ 0.73
SS18-219ENST00000581570 NHSL1Q5SYE7 1610 aa19.61■□□□□ 0.73
SS18-219ENST00000581570 XRN1Q8IZH2 1706 aaKnown RBP19.6■□□□□ 0.73
SS18-219ENST00000581570 ADGRL3Q9HAR2 1447 aa19.59■□□□□ 0.73
SS18-219ENST00000581570 IQGAP3Q86VI3 1631 aa19.59■□□□□ 0.73
SS18-219ENST00000581570 SETBP1Q9Y6X0 1596 aa19.59■□□□□ 0.73
SS18-219ENST00000581570 ADRA2BP18089 450 aa19.58■□□□□ 0.72
SS18-219ENST00000581570 NRXN3Q9Y4C0 1643 aa19.58■□□□□ 0.72
SS18-219ENST00000581570 ATAD2Q6PL18 1390 aa19.57■□□□□ 0.72
SS18-219ENST00000581570 USP21Q9UK80 565 aa19.57■□□□□ 0.72
SS18-219ENST00000581570 C1orf167Q5SNV9 1468 aa19.55■□□□□ 0.72
SS18-219ENST00000581570 TRPC5Q9UL62 973 aaPredicted RBP19.55■□□□□ 0.72
SS18-219ENST00000581570 ITGAEP38570 1179 aa19.54■□□□□ 0.72
SS18-219ENST00000581570 SOS2Q07890 1332 aaPredicted RBP19.53■□□□□ 0.72
SS18-219ENST00000581570 ORAI2Q96SN7 254 aa19.53■□□□□ 0.72
SS18-219ENST00000581570 ZRANB1Q9UGI0 708 aa19.53■□□□□ 0.72
SS18-219ENST00000581570 FNBP4Q8N3X1 1017 aaPredicted RBP19.52■□□□□ 0.72
SS18-219ENST00000581570 PTCH1Q13635 1447 aa19.49■□□□□ 0.71
SS18-219ENST00000581570 NALCNQ8IZF0 1738 aa19.48■□□□□ 0.71
SS18-219ENST00000581570 ATRNO75882 1429 aa19.47■□□□□ 0.71
SS18-219ENST00000581570 SRCAPQ6ZRS2 3230 aa19.47■□□□□ 0.71
SS18-219ENST00000581570 CCDC125Q86Z20 511 aa19.46■□□□□ 0.71
SS18-219ENST00000581570 NEXMIFQ5QGS0 1516 aa19.46■□□□□ 0.71
SS18-219ENST00000581570 ROBO2Q9HCK4 1378 aa19.45■□□□□ 0.7
SS18-219ENST00000581570 VGFO15240 615 aaPredicted RBP19.45■□□□□ 0.7
SS18-219ENST00000581570 SPHKAPQ2M3C7 1700 aa19.45■□□□□ 0.7
SS18-219ENST00000581570 LAMC1P11047 1609 aa19.43■□□□□ 0.7
SS18-219ENST00000581570 ESCO1Q5FWF5 840 aa19.41■□□□□ 0.7
SS18-219ENST00000581570 NPHP3Q7Z494 1330 aa19.41■□□□□ 0.7
SS18-219ENST00000581570 GJD4Q96KN9 370 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms